Browse Element(s) Details


OsAffx.30929.1.S1_x_at

Description tigr:9639.m01095
TID=OsAffx.30929.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1152011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11490NANA11+6377720..6380809Protein kinase domain containing protein, expressed
LOC_Os11g11500OsAffx.30928.1.S1_at11/1111+6388257..6390071Serpin family protein, expressed
LOC_Os11g11500Os.17796.1.S1_s_at11/1111+6388257..6390071Serpin family protein, expressed
LOC_Os11g11510OsAffx.18803.1.S1_at11/1111+6394013..6395478hypothetical protein
LOC_Os11g11520OsAffx.30929.1.S1_x_at11/1111+6400556..6402126hypothetical protein
LOC_Os11g11520OsAffx.30929.1.S1_at10/1111+6400556..6402126hypothetical protein
LOC_Os11g11530OsAffx.30930.1.S1_at11/1111+6406306..6407899ZmEBE-1 protein, putative
LOC_Os11g11530OsAffx.30930.1.S1_s_at11/1111+6406306..6407899ZmEBE-1 protein, putative
LOC_Os11g11540OsAffx.30936.1.S1_at11/1111+6413041..6413457hypothetical protein
LOC_Os11g11540OsAffx.15878.1.S1_x_at1/1111+6413041..6413457hypothetical protein
LOC_Os11g11550Os.27620.2.S1_x_at11/1111+6415329..6419818NB-ARC domain containing protein, expressed
LOC_Os11g11550Os.27620.3.S1_at10/1111+6415329..6419818NB-ARC domain containing protein, expressed
LOC_Os11g11560NANA11+6426097..6426351hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30929.1.S1_x_at--21--10691Chr11:6401856..6401875 (20 bp)
TTGCCCGGCCAAACTGAGGTCTCCT
LOC_Os11g11520
OsAffx.30929.1.S1_x_at--461--8471Chr11:6400743..6400767 (25 bp)
TGGCGTCCCGCTTCGTGAAGCACGT
LOC_Os11g11520
OsAffx.30929.1.S1_x_at--98--1491Chr11:6400725..6400749 (25 bp)
AGCACGTCCTCAAGAACCGGTCCAA
LOC_Os11g11520
OsAffx.30929.1.S1_x_at--135--9691Chr11:6400716..6400740 (25 bp)
TCAAGAACCGGTCCAACTCCGGTGG
LOC_Os11g11520
OsAffx.30929.1.S1_x_at--583--7711Chr11:6400696..6400720 (25 bp)
GGTGGCCCGCGGCTGGAGTTTGCGA
LOC_Os11g11520
OsAffx.30929.1.S1_x_at--433--8551Chr11:6400683..6400707 (25 bp)
TGGAGTTTGCGAGCGGCTTCTGGGC
LOC_Os11g11520
OsAffx.30929.1.S1_x_at--232--5771Chr11:6400657..6400681 (25 bp)
GACGCATCGAGGAGTCTTTCGCCGG
LOC_Os11g11520
OsAffx.30929.1.S1_x_at--996--4051Chr11:6400650..6400674 (25 bp)
CGAGGAGTCTTTCGCCGGAGTTCAT
LOC_Os11g11520
OsAffx.30929.1.S1_x_at--51--6071Chr11:6400633..6400657 (25 bp)
GAGTTCATGGGACTCGCCGGCTATA
LOC_Os11g11520
OsAffx.30929.1.S1_x_at--846--6731Chr11:6400631..6400655 (25 bp)
GTTCATGGGACTCGCCGGCTATATG
LOC_Os11g11520
OsAffx.30929.1.S1_x_at--849--4151Chr11:6400619..6400643 (25 bp)
CGCCGGCTATATGTACGGCTCTGAG
LOC_Os11g11520
Target Sequence 
TTGCCCGGCCAAACTGAGGTCTCCTCCTCCTACCTCCGGCGAGCCCTCCGCCGTCCACGCTTCCCCGCCCACTGGCGGCT
CTCCTCGGCCCCCGCGCAGCGGAGGAGGCGATGCCACCTCCGCGGCCGTTGGGGGAGGCGCTGGCCGCGGCGCGGCGCGC
CTTCTGCCTTCCACTCGCGGGGACCGCGAACGCTGCCGTGTCCGCCCCCGCCGTCCACGTCTCCCTGGCGCTCGCCGCCG
CGGGCGCGCGGGGCGCCACGCGGAGGCAGCTGGCGGCGGCGGCGGCGGCGACGCGGCCAGCGTGGCGTCCCGCTTCGTGA
AGCACGTCCTCAAGAACCGGTCCAACTCCGGTGGCCCGCGGCTGGAGTTTGCGAGCGGCTTCTGGGCCGACGCATCGAGG
AGTCTTTCGCCGGAGTTCATGGGACTCGCCGGCTATATGTACGGCTCTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30929.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis