Browse Element(s) Details


OsAffx.30928.1.S1_at

Description tigr:9639.m01093
TID=OsAffx.30928.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=barley protein Z homolog
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1150011/11Serpin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11460OsAffx.18801.1.S1_at11/1111+6367344..6367937hypothetical protein
LOC_Os11g11480OsAffx.7079.1.S1_at11/1111+6372615..6373329hypothetical protein
LOC_Os11g11490NANA11+6377720..6380809Protein kinase domain containing protein, expressed
LOC_Os11g11500OsAffx.30928.1.S1_at11/1111+6388257..6390071Serpin family protein, expressed
LOC_Os11g11500Os.17796.1.S1_s_at11/1111+6388257..6390071Serpin family protein, expressed
LOC_Os11g11510OsAffx.18803.1.S1_at11/1111+6394013..6395478hypothetical protein
LOC_Os11g11520OsAffx.30929.1.S1_x_at11/1111+6400556..6402126hypothetical protein
LOC_Os11g11520OsAffx.30929.1.S1_at10/1111+6400556..6402126hypothetical protein
LOC_Os11g11530OsAffx.30930.1.S1_at11/1111+6406306..6407899ZmEBE-1 protein, putative
LOC_Os11g11530OsAffx.30930.1.S1_s_at11/1111+6406306..6407899ZmEBE-1 protein, putative
LOC_Os11g11540OsAffx.30936.1.S1_at11/1111+6413041..6413457hypothetical protein
LOC_Os11g11540OsAffx.15878.1.S1_x_at1/1111+6413041..6413457hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004867molecular_functionserine-type endopeptidase inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30928.1.S1_at--1047--6431Chr11:6388823..6388847 (25 bp)
GATCATGATGGCTTGTTTGAATTAA
LOC_Os11g11500
OsAffx.30928.1.S1_at--241--8491Chr11:6388815..6388839 (25 bp)
TGGCTTGTTTGAATTAACCCAGAAG
LOC_Os11g11500
OsAffx.30928.1.S1_at--556--2611Chr11:6388800..6388824 (25 bp)
AACCCAGAAGATTTTCTCTGAACCA
LOC_Os11g11500
OsAffx.30928.1.S1_at--219--6551Chr11:6388791..6388815 (25 bp)
GATTTTCTCTGAACCAATGTTCCTA
LOC_Os11g11500
OsAffx.30928.1.S1_at--571--10631Chr11:6388772..6388796 (25 bp)
TTCCTAGAACAACATTTACCAACAG
LOC_Os11g11500
OsAffx.30928.1.S1_at--1045--171Chr11:6388759..6388783 (25 bp)
ATTTACCAACAGAGAAATGCCATGT
LOC_Os11g11500
OsAffx.30928.1.S1_at--892--3011Chr11:6388744..6388768 (25 bp)
AATGCCATGTGGGTATCTCGGTGCC
LOC_Os11g11500
OsAffx.30928.1.S1_at--176--371Chr11:6388730..6388754 (25 bp)
ATCTCGGTGCCCAACTTTAAAATAT
LOC_Os11g11500
OsAffx.30928.1.S1_at--61--9831Chr11:6388713..6388737 (25 bp)
TAAAATATCTTTCCAGATCGATGTA
LOC_Os11g11500
OsAffx.30928.1.S1_at--84--6391Chr11:6388698..6388722 (25 bp)
GATCGATGTAAAGGATTTTCTGAAA
LOC_Os11g11500
OsAffx.30928.1.S1_at--763--8971Chr11:6388662..6388686 (25 bp)
TGAACTACCTTTCCTCCGGGAAGCT
LOC_Os11g11500
Target Sequence 
GATCATGATGGCTTGTTTGAATTAACCCAGAAGATTTTCTCTGAACCAATGTTCCTAGAACAACATTTACCAACAGAGAA
ATGCCATGTGGGTATCTCGGTGCCCAACTTTAAAATATCTTTCCAGATCGATGTAAAGGATTTTCTGAAAGATATGGGGC
TTGAACTACCTTTCCTCCGGGAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30928.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis