Browse Element(s) Details


Os.17796.1.S1_s_at

Description gb:BI813621
DB_XREF= gi:16579526
DB_XREF=L002D02
CLONE=L002D02
TID=Os.17796.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.17796 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_180207.1 (A.thaliana) putative serpin (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1150011/11Serpin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11460OsAffx.18801.1.S1_at11/1111+6367344..6367937hypothetical protein
LOC_Os11g11480OsAffx.7079.1.S1_at11/1111+6372615..6373329hypothetical protein
LOC_Os11g11490NANA11+6377720..6380809Protein kinase domain containing protein, expressed
LOC_Os11g11500OsAffx.30928.1.S1_at11/1111+6388257..6390071Serpin family protein, expressed
LOC_Os11g11500Os.17796.1.S1_s_at11/1111+6388257..6390071Serpin family protein, expressed
LOC_Os11g11510OsAffx.18803.1.S1_at11/1111+6394013..6395478hypothetical protein
LOC_Os11g11520OsAffx.30929.1.S1_x_at11/1111+6400556..6402126hypothetical protein
LOC_Os11g11520OsAffx.30929.1.S1_at10/1111+6400556..6402126hypothetical protein
LOC_Os11g11530OsAffx.30930.1.S1_at11/1111+6406306..6407899ZmEBE-1 protein, putative
LOC_Os11g11530OsAffx.30930.1.S1_s_at11/1111+6406306..6407899ZmEBE-1 protein, putative
LOC_Os11g11540OsAffx.30936.1.S1_at11/1111+6413041..6413457hypothetical protein
LOC_Os11g11540OsAffx.15878.1.S1_x_at1/1111+6413041..6413457hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004867molecular_functionserine-type endopeptidase inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17796.1.S1_s_at--207--1311Chr11:6388614..6388638 (25 bp)
AGATGACTCAAGTGGTCCTCTGTTT
LOC_Os11g11500
Os.17796.1.S1_s_at--195--2871Chr11:6388605..6388629 (25 bp)
AAGTGGTCCTCTGTTTCTGTCTGAT
LOC_Os11g11500
Os.17796.1.S1_s_at--98--5551Chr11:6388535..6388559 (25 bp)
GAAACTTCAGTATCAATGGGCTTGG
LOC_Os11g11500
Os.17796.1.S1_s_at--342--8651Chr11:6388513..6388537 (25 bp)
TGGGCAAGCCTTTGCCAGCACAACA
LOC_Os11g11500
Os.17796.1.S1_s_at--591--1731Chr11:6388477..6388501 (25 bp)
ACCATCCGTTCTTCTTCATGATTAG
LOC_Os11g11500
Os.17796.1.S1_s_at--239--8931Chr11:6388410..6388434 (25 bp)
TGACCCTTCATCACGGACATAGCAT
LOC_Os11g11500
Os.17796.1.S1_s_at--373--4971Chr11:6388389..6388413 (25 bp)
GCATCAGGTTGTAGTCTTTTATCAC
LOC_Os11g11500
Os.17796.1.S1_s_at--410--7151Chr11:6388376..6388400 (25 bp)
GTCTTTTATCACCTGTTTGCACTAA
LOC_Os11g11500
Os.17796.1.S1_s_at--7--6911Chr11:6388342..6388366 (25 bp)
GTATCTCTATCATTGCTAGTCTGCC
LOC_Os11g11500
Os.17796.1.S1_s_at--336--3831Chr11:6388322..6388346 (25 bp)
CTGCCTGGCAGAAGTTTTGGTACAT
LOC_Os11g11500
Os.17796.1.S1_s_at--1103--10371Chr11:6388287..6388311 (25 bp)
TTTTCTCACTTTTTGTAACACACTG
LOC_Os11g11500
Target Sequence 
AGATGACTCAAGTGGTCCTCTGTTTCTGTCTGATGTACTTCATAAATCGGTTTTGGAGGTTGATCCAAAAGGAATTGAAG
AAACTTCAGTATCAATGGGCTTGGGCAAGCCTTTGCCAGCACAACACTTCAAGGCCGACCATCCGTTCTTCTTCATGATT
AGGGAGGAGGTCTCTGGAACAGTAATATTCATGGGGCATGTGCTTGACCCTTCATCACGGACATAGCATCAGGTTGTAGT
CTTTTATCACCTGTTTGCACTAATGTATTGGAGTATCTCTATCATTGCTAGTCTGCCTGGCAGAAGTTTTGGTACATGAG
TATTTATTTTTCTCACTTTTTGTAACACACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17796.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis