Browse Element(s) Details


OsAffx.18803.1.S1_at

Description tigr:9639.m01094
TID=OsAffx.18803.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1151011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11480OsAffx.7079.1.S1_at11/1111+6372615..6373329hypothetical protein
LOC_Os11g11490NANA11+6377720..6380809Protein kinase domain containing protein, expressed
LOC_Os11g11500OsAffx.30928.1.S1_at11/1111+6388257..6390071Serpin family protein, expressed
LOC_Os11g11500Os.17796.1.S1_s_at11/1111+6388257..6390071Serpin family protein, expressed
LOC_Os11g11510OsAffx.18803.1.S1_at11/1111+6394013..6395478hypothetical protein
LOC_Os11g11520OsAffx.30929.1.S1_x_at11/1111+6400556..6402126hypothetical protein
LOC_Os11g11520OsAffx.30929.1.S1_at10/1111+6400556..6402126hypothetical protein
LOC_Os11g11530OsAffx.30930.1.S1_at11/1111+6406306..6407899ZmEBE-1 protein, putative
LOC_Os11g11530OsAffx.30930.1.S1_s_at11/1111+6406306..6407899ZmEBE-1 protein, putative
LOC_Os11g11540OsAffx.30936.1.S1_at11/1111+6413041..6413457hypothetical protein
LOC_Os11g11540OsAffx.15878.1.S1_x_at1/1111+6413041..6413457hypothetical protein
LOC_Os11g11550Os.27620.2.S1_x_at11/1111+6415329..6419818NB-ARC domain containing protein, expressed
LOC_Os11g11550Os.27620.3.S1_at10/1111+6415329..6419818NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18803.1.S1_at--51--7491Chr11:6394735..6394759 (25 bp)
GTGGGCCTAACACCTCAGACTGTAG
LOC_Os11g11510
OsAffx.18803.1.S1_at--1033--1391Chr11:6394719..6394743 (25 bp)
AGACTGTAGGCTCCTCCAAATTCTG
LOC_Os11g11510
OsAffx.18803.1.S1_at--46--1471Chr11:6394550..6394570 (21 bp)
AGAAGGCAGGCAGGTATTACACTCC
LOC_Os11g11510
OsAffx.18803.1.S1_at--163--10031Chr11:6394493..6394517 (25 bp)
TAGACGTCTTTATGGATGGCGATGC
LOC_Os11g11510
OsAffx.18803.1.S1_at--987--1731Chr11:6394452..6394476 (25 bp)
ACCATCACGTTGTTGCATTACCTCA
LOC_Os11g11510
OsAffx.18803.1.S1_at--773--6031Chr11:6394381..6394434 (25 bp)
GAGATAGCCCTCAGTATCGACACAG
LOC_Os11g11510
OsAffx.18803.1.S1_at--314--2231Chr11:6394317..6394341 (25 bp)
ACAAGGTTGTTGTGCTCCAGCTCTG
LOC_Os11g11510
OsAffx.18803.1.S1_at--489--10731Chr11:6394275..6394299 (25 bp)
TTGTCTTCCAACTCTACCAAGCTAG
LOC_Os11g11510
OsAffx.18803.1.S1_at--1036--2671Chr11:6394257..6394281 (25 bp)
AAGCTAGCAACGAGGTTCCACGCGA
LOC_Os11g11510
OsAffx.18803.1.S1_at--1116--8371Chr11:6394167..6394191 (25 bp)
GGCGACTAGCCAATGAGTGCAACCT
LOC_Os11g11510
OsAffx.18803.1.S1_at--562--8471Chr11:6394055..6394079 (25 bp)
TGGCGCTCATAGTGATGGGCACCCG
LOC_Os11g11510
Target Sequence 
GTGGGCCTAACACCTCAGACTGTAGGCTCCTCCAAATTCTGAAGTCTGACTACAATTCCAAGAAGGCAGGCAGGTATTAC
ACTCCCCCAACTCCTCATCCTCCTCCCGAGAACACGCTAGACGTCTTTATGGATGGCGATGCCATGGCGATCCGCACCAC
CATCACGTTGTTGCATTACCTCACCACCCAGTTCATCAACGAGATAGCCCTCAGTATCGACACAGAGTGGCGCGAGGACC
ATGAGCCCGACGACAAAAAATGTTACAAGGTTGTTGTGCTCCAGCTCTGTGTCAACCGTCGGTGCCTTGTCTTCCAACTC
TACCAAGCTAGCAACGAGGTTCCACGCGAGCTCGCGGAGTTCCTCGCCGACGCAGGTGTCCGTTTCGTCGGCGTTGGGGT
CGACGGCGGTGTGCGGCGACTAGCCAATGAGTGCAACCTGAGGGTTGCCTGCGCGGTGGATCTGAGAGACGCTGCGGCGG
CCGTGCTCGGCCGGCCAGAGCTTGCGAGGGTGGGGGCTGAAGAGCCTGGCGCTCATAGTGATGGGCACCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18803.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis