Browse Element(s) Details


Os.27620.2.S1_x_at

Description gb:AK101439.1
DB_XREF= gi:32986648
TID=Os.27620.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27620 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033088C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033039D21, full insert sequence.
FL= gb:AK101439.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1155011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11510OsAffx.18803.1.S1_at11/1111+6394013..6395478hypothetical protein
LOC_Os11g11520OsAffx.30929.1.S1_x_at11/1111+6400556..6402126hypothetical protein
LOC_Os11g11520OsAffx.30929.1.S1_at10/1111+6400556..6402126hypothetical protein
LOC_Os11g11530OsAffx.30930.1.S1_at11/1111+6406306..6407899ZmEBE-1 protein, putative
LOC_Os11g11530OsAffx.30930.1.S1_s_at11/1111+6406306..6407899ZmEBE-1 protein, putative
LOC_Os11g11540OsAffx.30936.1.S1_at11/1111+6413041..6413457hypothetical protein
LOC_Os11g11540OsAffx.15878.1.S1_x_at1/1111+6413041..6413457hypothetical protein
LOC_Os11g11550Os.27620.2.S1_x_at11/1111+6415329..6419818NB-ARC domain containing protein, expressed
LOC_Os11g11550Os.27620.3.S1_at10/1111+6415329..6419818NB-ARC domain containing protein, expressed
LOC_Os11g11560NANA11+6426097..6426351hypothetical protein
LOC_Os11g11570NANA11+6430524..6430778hypothetical protein
LOC_Os11g11580Os.49868.1.S1_at11/1111+6435787..6444994NB-ARC domain containing protein, expressed
LOC_Os11g11580OsAffx.30932.1.S1_at11/1111+6435787..6444994NB-ARC domain containing protein, expressed
LOC_Os11g11580Os.50218.1.S1_at1/1111+6435787..6444994NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27620.2.S1_x_at--530--591Chr11:6416755..6416779 (25 bp)
ATGCCTTGTGGTGCAAAATCCCAAT
LOC_Os11g11550
Os.27620.2.S1_x_at--1060--531Chr11:6416738..6416762 (25 bp)
ATCCCAATCTCCCTACAGTTGAAAA
LOC_Os11g11550
Os.27620.2.S1_x_at--908--8731Chr11:6416693..6416717 (25 bp)
TGTCACTCCAATTGCTCTGCAAGGA
LOC_Os11g11550
Os.27620.2.S1_x_at--1078--991Chr11:6416672..6416696 (25 bp)
AGGATCTAGTTGGTCTTTCTGAAAT
LOC_Os11g11550
Os.27620.2.S1_x_at--139--5351Chr11:6416619..6416643 (25 bp)
GAAGTTGCTCTTGATTCTATGGTCA
LOC_Os11g11550
Os.27620.2.S1_x_at--200--3071Chr11:6416547..6416571 (25 bp)
AATAGACCCAAGGTTCTGTTCCGCA
LOC_Os11g11550
Os.27620.2.S1_x_at--820--3851Chr11:6416532..6416556 (25 bp)
CTGTTCCGCAAGAGGGTTGATCCAA
LOC_Os11g11550
Os.27620.2.S1_x_at--550--4051Chr11:6416506..6416530 (25 bp)
CGATGCTCAGTCCACAGCGAAGTAT
LOC_Os11g11550
Os.27620.2.S1_x_at--662--8151Chr11:6416426..6416450 (25 bp)
GGAAATTCCATGCTATCCAATCATA
LOC_Os11g11550
Os.27620.2.S1_x_at--949--9771Chr11:6416369..6416393 (25 bp)
TAAGATGCTGCTCTGGCGTTTAACT
LOC_Os11g11550
Os.27620.2.S1_x_at--893--6111Chr11:6416255..6416279 (25 bp)
GAGTGAGACCCATGTAGCAAAATGT
LOC_Os11g11550
Target Sequence 
ATGCCTTGTGGTGCAAAATCCCAATCTCCCTACAGTTGAAAAAGGAGCTTTGCCACATCTCCTGTCACTCCAATTGCTCT
GCAAGGATCTAGTTGGTCTTTCTGAAATCAAGATTGAGTACCATGATTACCTTGAGGAAGTTGCTCTTGATTCTATGGTC
AATATAGAAACAATAGAAATTTGGGAAAATGAAGCTAAGAAGCACCCAAATAGACCCAAGGTTCTGTTCCGCAAGAGGGT
TGATCCAACCGATGCTCAGTCCACAGCGAAGTATGCTGCAACAGAAAGACCAGTACCTGAGACAGGATGCCCTGCGGTGA
TAAAAAAAACGGAAATTCCATGCTATCCAATCATATTATAACGAGTCTGTTGAAACAAAAAAGAGTTTAAGATGCTGCTC
TGGCGTTTAACTGAGGTGCCAAATGCTGGCAATGGTTTGTAGATTCTTCTTTAGGTAAGAATCTAAATCCTTGAGGCAGA
AACTGGTTGGTTGATGTTGTGGAGTGAGACCCATGTAGCAAAATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27620.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis