Browse Element(s) Details


Os.50218.1.S1_at

Description gb:AK120158.1
DB_XREF= gi:37989781
TID=Os.50218.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50218 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023106N09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013030F03, full insert sequence.
FL= gb:AK100595.1 gb:AK073126.1 gb:AK120158.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3332011/11RNA recognition motif family protein, expressed
LOC_Os11g115801/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33260NANA2+19761712..19764578retrotransposon protein, putative, unclassified
LOC_Os02g33270OsAffx.940.1.S1_x_at1/112+19765434..19767521retrotransposon protein, putative, unclassified
LOC_Os02g33270OsAffx.22896.1.S1_x_at1/112+19765434..19767521retrotransposon protein, putative, unclassified
LOC_Os02g33280OsAffx.22722.1.S1_x_at1/112+19769557..19774224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g33280OsAffx.22722.1.S1_at1/112+19769557..19774224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g33280OsAffx.1646.1.S1_x_at1/112+19769557..19774224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g33290Os.55352.1.S1_x_at11/112+19775905..19777735expressed protein
LOC_Os02g33300OsAffx.12333.1.S1_x_at11/112+19779468..19779782hypothetical protein
LOC_Os02g33310OsAffx.12334.1.S1_at11/112+19783277..19785110F-box domain containing protein
LOC_Os02g33320Os.50218.1.S1_at11/112+19785512..19790341RNA recognition motif family protein, expressed
LOC_Os02g33330Os.6723.1.S1_s_at11/112+19791948..19792850B-type cyclin, putative, expressed
LOC_Os02g33330Os.6723.1.S1_at11/112+19791948..19792850B-type cyclin, putative, expressed
LOC_Os02g33340NANA2+19802054..19806078retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g33350OsAffx.2838.1.S1_at11/112+19813045..19814436hypothetical protein
LOC_Os02g33350OsAffx.12334.1.S1_at1/112+19813045..19814436hypothetical protein
LOC_Os02g33360OsAffx.22699.1.S1_x_at3/112+19814820..19821186retrotransposon protein, putative, unclassified
LOC_Os02g33360OsAffx.18275.1.S1_x_at1/112+19814820..19821186retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50218.1.S1_at--218--10111Chr02:19789665..19789689 (25 bp)
TATGATTTCCTTAGTACTCCCTCCC
LOC_Os02g33320
Os.50218.1.S1_at--574--4193Chr11:6441591..6441614 (24 bp)
CCCTCTGGTTTCATAATTCTTGACA
LOC_Os11g11580
Os.50218.1.S1_at--848--6351Chr02:19789897..19789921 (25 bp)
GATCTTAACCTTATCCTAAACACCA
LOC_Os02g33320
Os.50218.1.S1_at--28--10791Chr02:19789961..19789985 (25 bp)
TTGTAATCAACAACTTCCATACCCC
LOC_Os02g33320
Os.50218.1.S1_at--226--3571Chr02:19789978..19790002 (25 bp)
CATACCCCGCTAATCGAGCTGAAAT
LOC_Os02g33320
Os.50218.1.S1_at--43--3471Chr02:19790007..19790031 (25 bp)
CAGTGATGCCACTTCGTGATAGATT
LOC_Os02g33320
Os.50218.1.S1_at--632--10551Chr02:19790086..19790110 (25 bp)
TTCTTCGCATGTTTGAGTCGTCACT
LOC_Os02g33320
Os.50218.1.S1_at--593--5391Chr02:19790146..19790170 (25 bp)
GAAGCTTTGCTAACTGGATTACCTG
LOC_Os02g33320
Os.50218.1.S1_at--627--6771Chr02:19790170..19790194 (25 bp)
GTTACTTTTATGTAGCTACCCTATG
LOC_Os02g33320
Os.50218.1.S1_at--860--9951Chr02:19790186..19790210 (25 bp)
TACCCTATGAGGATTATGCCATTCT
LOC_Os02g33320
Os.50218.1.S1_at--560--592Chr06:27834065..27834085 (21 bp)
ATGCCATTCTGGCTGGACACATGAA
NONE
Target Sequence 
TATGATTTCCTTAGTACTCCCTCCCTCTGGTTTCATAATTCTTGACATTTTGGACAATGATATGGTCTCCAAAATATATC
TTTAACTATGTTTTCTCTATTATAATATATACAATAAATAAGTATATTTTTACTTTTATTATAGTACTTATAAGACAAAT
CTATATATGTTGTTTTAGTGTCTTTAAACTTAATATTTTAGAAGTTATTGATAGTCAAAGTTATAAAAGTTTGATCTTAA
CCTTATCCTAAACACCAAGACTTATGAAACCGGAGGGAGTATGACTACAATTATTTTTGTAATCAACAACTTCCATACCC
CGCTAATCGAGCTGAAATATTACAGTGATGCCACTTCGTGATAGATTTCATATGCAAGATGTGCTCCCCCGGCTTACAAG
CTTTTGGATAGGACCAAGAAATTCTTCGCATGTTTGAGTCGTCACTGTTATTTTTGTGTAGCTGAATTGGAGTAGGTGAT
TGAAGCTTTGCTAACTGGATTACCTGTTACTTTTATGTAGCTACCCTATGAGGATTATGCCATTCTGGCTGGACACATGA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50218.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis