Browse Element(s) Details


OsAffx.2838.1.S1_at

Description tigr:9630.m03168
TID=OsAffx.2838.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3335011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33320Os.50218.1.S1_at11/112+19785512..19790341RNA recognition motif family protein, expressed
LOC_Os02g33330Os.6723.1.S1_s_at11/112+19791948..19792850B-type cyclin, putative, expressed
LOC_Os02g33330Os.6723.1.S1_at11/112+19791948..19792850B-type cyclin, putative, expressed
LOC_Os02g33340NANA2+19802054..19806078retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g33350OsAffx.2838.1.S1_at11/112+19813045..19814436hypothetical protein
LOC_Os02g33350OsAffx.12334.1.S1_at1/112+19813045..19814436hypothetical protein
LOC_Os02g33360OsAffx.22699.1.S1_x_at3/112+19814820..19821186retrotransposon protein, putative, unclassified
LOC_Os02g33360OsAffx.18275.1.S1_x_at1/112+19814820..19821186retrotransposon protein, putative, unclassified
LOC_Os02g33370NANA2+19822450..19825931hypothetical protein
LOC_Os02g33380Os.51460.1.S1_at11/112+19828413..19829214pectinesterase inhibitor domain containing protein, expressed
LOC_Os02g33390NANA2+19832399..19832950pectinesterase inhibitor domain containing protein
LOC_Os02g33400Os.5865.1.S1_at11/112+19836322..19839251F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2838.1.S1_at--601--2411Chr02:19814037..19814061 (25 bp)
AAAAAGATGCACCATTGGCTTGCCT
LOC_Os02g33350
OsAffx.2838.1.S1_at--879--231Chr02:19813943..19813967 (25 bp)
ATATATAAGCTGATCTCCTCGTGCC
LOC_Os02g33350
OsAffx.2838.1.S1_at--896--7271Chr02:19813923..19813947 (25 bp)
GTGCCCCTGGCTGAATATGTTGCGT
LOC_Os02g33350
OsAffx.2838.1.S1_at--1067--1051Chr02:19813561..19813585 (25 bp)
AGGGTGCTTGTTGGCAGAACTCCCA
LOC_Os02g33350
OsAffx.2838.1.S1_at--689--9311Chr02:19813541..19813565 (25 bp)
TCCCAGGCGTGTTTGATCGTCTAAG
LOC_Os02g33350
OsAffx.2838.1.S1_at--75--1471Chr02:19813502..19813526 (25 bp)
AGAAGTGCTCTTGGGTCTGGACAGA
LOC_Os02g33350
OsAffx.2838.1.S1_at--404--191Chr02:19813456..19813480 (25 bp)
ATTTCGGAATGCCTCTAAGTTCAGA
LOC_Os02g33350
OsAffx.2838.1.S1_at--16--6491Chr02:19813321..19813447 (25 bp)
GATACGGAGCTTCTACAGCGATGAA
LOC_Os02g33350
OsAffx.2838.1.S1_at--688--2151Chr02:19813192..19813216 (25 bp)
ACACGAAATCGCTCTTGTTGGACTG
LOC_Os02g33350
OsAffx.2838.1.S1_at--553--6031Chr02:19813162..19813186 (25 bp)
GAGATGGTCACCCACCTTAGAGGAA
LOC_Os02g33350
OsAffx.2838.1.S1_at--178--4691Chr02:19813116..19813140 (25 bp)
GCGGATGTCCCGAATGATGATTGCA
LOC_Os02g33350
Target Sequence 
AAAAAGATGCACCATTGGCTTGCCTCAGGAGTTTGAAGATAGAGATATATATAAGCTGATCTCCTCGTGCCCCTGGCTGA
ATATGTTGCGTCTGAAATATTTGAGGTATCTATCAGAAGGGTGCTTGTTGGCAGAACTCCCAGGCGTGTTTGATCGTCTA
AGGAAGATTTGTATTGAGAAGTGCTCTTGGGTCTGGACAGAGGTCTTGGGTGCTTGTTCAATATTTCGGAATGCCTCTAA
GTTCAGAGAACTTGAGATACGGAGCTTCTACAGCGATGAAGAATTTTGGTATCAGCCAATATGGGATAACGATCAGGCGG
AGATTGAAGAGCCTACCTTGCATCACCTCGTGACGGTGACCATTAACGATTTCGTGGGGCTGGAACACGAAATCGCTCTT
GTTGGACTGCTCCTGAGATGGTCACCCACCTTAGAGGAACTGAAGATAGTCAGGGAGGACGCGGATGTCCCGAATGATGA
TTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2838.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis