Browse Element(s) Details


Os.5865.1.S1_at

Description gb:AK102851.1
DB_XREF= gi:32988060
TID=Os.5865.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5865 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033110E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033110E07, full insert sequence.
FL= gb:AK102851.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3340011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33350OsAffx.2838.1.S1_at11/112+19813045..19814436hypothetical protein
LOC_Os02g33350OsAffx.12334.1.S1_at1/112+19813045..19814436hypothetical protein
LOC_Os02g33360OsAffx.22699.1.S1_x_at3/112+19814820..19821186retrotransposon protein, putative, unclassified
LOC_Os02g33360OsAffx.18275.1.S1_x_at1/112+19814820..19821186retrotransposon protein, putative, unclassified
LOC_Os02g33370NANA2+19822450..19825931hypothetical protein
LOC_Os02g33380Os.51460.1.S1_at11/112+19828413..19829214pectinesterase inhibitor domain containing protein, expressed
LOC_Os02g33390NANA2+19832399..19832950pectinesterase inhibitor domain containing protein
LOC_Os02g33400Os.5865.1.S1_at11/112+19836322..19839251F-box domain containing protein, expressed
LOC_Os02g33410OsAffx.2840.1.S1_at11/112+19842261..19843365hypothetical protein
LOC_Os02g33420Os.24851.1.S1_at11/112+19854206..19858642ATPase, AAA family protein, expressed
LOC_Os02g33430Os.423.1.S1_a_at11/112+19862332..19867439E2F protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5865.1.S1_at--909--5631Chr02:19836822..19836846 (25 bp)
GACAGTGGCCATAAACGATTTCGTG
LOC_Os02g33400
Os.5865.1.S1_at--799--5891Chr02:19836759..19836783 (25 bp)
GAGCTGGTCACCTGCTTTAGAGGAT
LOC_Os02g33400
Os.5865.1.S1_at--558--4393Chr02:19848282..19848306 (25 bp)
GCCAAGATCACTGTCATCTGATTCA
NONE
Os.5865.1.S1_at--723--751Chr02:19836614..19836638 (25 bp)
ATGTACATCCAGGTCATTCGGCTGC
LOC_Os02g33400
Os.5865.1.S1_at--1015--4771Chr02:19836594..19836618 (25 bp)
GCTGCGTTTTTGCTTCATATCGACG
LOC_Os02g33400
Os.5865.1.S1_at--850--9591Chr02:19836580..19836604 (25 bp)
TCATATCGACGTTTGCTTGTGGCAG
LOC_Os02g33400
Os.5865.1.S1_at--74--1991Chr02:19836551..19836575 (25 bp)
ACTGCTGTTAGTCTGTGTCCTTGGA
LOC_Os02g33400
Os.5865.1.S1_at--475--1191Chr02:19836495..19836519 (25 bp)
AGTAGTCTGTTAATTCGCTCCATCT
LOC_Os02g33400
Os.5865.1.S1_at--201--9231Chr02:19836477..19836501 (25 bp)
TCCATCTTCCCTTTGAACTAGACAT
LOC_Os02g33400
Os.5865.1.S1_at--851--5471Chr02:19836463..19836487 (25 bp)
GAACTAGACATGCTTTGCTCAGAAT
LOC_Os02g33400
Os.5865.1.S1_at--300--5331Chr02:19836385..19836409 (25 bp)
GAAGTCGGTCAGCAAGCTCCATTTA
LOC_Os02g33400
Target Sequence 
GACAGTGGCCATAAACGATTTCGTGGGGCTCAACTGCGAGGTTGCTCTTGTTGGACTGCTACTGAGCTGGTCACCTGCTT
TAGAGGATCTGAAGATATTCAGGGCCAAGAACGTTAACGATGAATACATGTGCATTTGCAAGGGTCTTACCAAGTTACTG
GCTCTCCCGAGGGCGTCTAGCAAAGCCAAGATCACTGTCATCTGATTCATGTACATCCAGGTCATTCGGCTGCGTTTTTG
CTTCATATCGACGTTTGCTTGTGGCAGAACTACTGCTGTTAGTCTGTGTCCTTGGATTTTGGGGGTTATGCGTTAAATCT
AAATCTTAGTAGTCTGTTAATTCGCTCCATCTTCCCTTTGAACTAGACATGCTTTGCTCAGAATGAATGTTCTTGGTTGG
AGAATTGCCATGTCTNTTCTGTTCGTTCAACAAACTAGAAGTCGGTCAGCAAGCTCCATTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5865.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis