Browse Element(s) Details


OsAffx.2840.1.S1_at

Description tigr:9630.m03174
TID=OsAffx.2840.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3341011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33360OsAffx.22699.1.S1_x_at3/112+19814820..19821186retrotransposon protein, putative, unclassified
LOC_Os02g33360OsAffx.18275.1.S1_x_at1/112+19814820..19821186retrotransposon protein, putative, unclassified
LOC_Os02g33370NANA2+19822450..19825931hypothetical protein
LOC_Os02g33380Os.51460.1.S1_at11/112+19828413..19829214pectinesterase inhibitor domain containing protein, expressed
LOC_Os02g33390NANA2+19832399..19832950pectinesterase inhibitor domain containing protein
LOC_Os02g33400Os.5865.1.S1_at11/112+19836322..19839251F-box domain containing protein, expressed
LOC_Os02g33410OsAffx.2840.1.S1_at11/112+19842261..19843365hypothetical protein
LOC_Os02g33420Os.24851.1.S1_at11/112+19854206..19858642ATPase, AAA family protein, expressed
LOC_Os02g33430Os.423.1.S1_a_at11/112+19862332..19867439E2F protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2840.1.S1_at--798--4931Chr02:19842857..19842881 (25 bp)
GCATAGAAGCACATCCCGCTAAGGT
LOC_Os02g33410
OsAffx.2840.1.S1_at--1107--531Chr02:19842845..19842869 (25 bp)
ATCCCGCTAAGGTCGCTAAGGTATT
LOC_Os02g33410
OsAffx.2840.1.S1_at--17--7231Chr02:19842834..19842858 (25 bp)
GTCGCTAAGGTATTTGGTGGTTACA
LOC_Os02g33410
OsAffx.2840.1.S1_at--1032--8611Chr02:19842820..19842844 (25 bp)
TGGTGGTTACAATAAGTGGCTCTTT
LOC_Os02g33410
OsAffx.2840.1.S1_at--636--7531Chr02:19842590..19842829 (25 bp)
GTGGCTCTTTCTTGATGAATGCCCC
LOC_Os02g33410
OsAffx.2840.1.S1_at--560--9551Chr02:19842585..19842824 (25 bp)
TCTTTCTTGATGAATGCCCCTACAT
LOC_Os02g33410
OsAffx.2840.1.S1_at--986--9151Chr02:19842571..19842595 (25 bp)
TGCCCCTACATTCAGAGAACACATC
LOC_Os02g33410
OsAffx.2840.1.S1_at--496--1431Chr02:19842431..19842580 (25 bp)
AGAACACATCCCACTAAGAGCTTCC
LOC_Os02g33410
OsAffx.2840.1.S1_at--27--10231Chr02:19842392..19842416 (25 bp)
TTTAGACGTAAAAGGACATGGGATC
LOC_Os02g33410
OsAffx.2840.1.S1_at--430--3371Chr02:19842332..19842356 (25 bp)
CACCTCGTGACAGTGATCATTAAAC
LOC_Os02g33410
OsAffx.2840.1.S1_at--42--10491Chr02:19842313..19842337 (25 bp)
TTAAACGATTTCGTTGGGCTCGACT
LOC_Os02g33410
Target Sequence 
GCATAGAAGCACATCCCGCTAAGGTCGCTAAGGTATTTGGTGGTTACAATAAGTGGCTCTTTCTTGATGAATGCCCCTAC
ATTCAGAGAACACATCCCACTAAGAGCTTCCCCCGTCCAGAAGCTTTTAGACGTAAAAGGACATGGGATCAGGATCAAAC
GGAGATTGAAGAGCCTACCTTGCATCACCTCGTGACAGTGATCATTAAACGATTTCGTTGGGCTCGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2840.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis