Browse Element(s) Details


Os.24851.1.S1_at

Description gb:AK064436.1
DB_XREF= gi:32974454
TID=Os.24851.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24851 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-110-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-D08, full insert sequence.
FL= gb:AK064436.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3342011/11ATPase, AAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33380Os.51460.1.S1_at11/112+19828413..19829214pectinesterase inhibitor domain containing protein, expressed
LOC_Os02g33390NANA2+19832399..19832950pectinesterase inhibitor domain containing protein
LOC_Os02g33400Os.5865.1.S1_at11/112+19836322..19839251F-box domain containing protein, expressed
LOC_Os02g33410OsAffx.2840.1.S1_at11/112+19842261..19843365hypothetical protein
LOC_Os02g33420Os.24851.1.S1_at11/112+19854206..19858642ATPase, AAA family protein, expressed
LOC_Os02g33430Os.423.1.S1_a_at11/112+19862332..19867439E2F protein, putative, expressed
LOC_Os02g33440NANA2+19872435..19872855hypothetical protein
LOC_Os02g33450OsAffx.2841.1.S1_at9/112+19876213..198798822-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
LOC_Os02g33450Os.12196.1.S1_at9/112+19876213..198798822-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0009408biological_processresponse to heat
GO:0009658biological_processchloroplast organization and biogenesis
GO:0043335biological_processprotein unfolding
GO:0045037biological_processprotein import into chloroplast stroma
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0009570cellular_componentchloroplast stroma
GO:0004176molecular_functionATP-dependent peptidase activity
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24851.1.S1_at--1119--8671Chr02:19858159..19858183 (25 bp)
TGTGATGACAAAGCTCTCTGAGATG
LOC_Os02g33420
Os.24851.1.S1_at--605--2531Chr02:19858213..19858237 (25 bp)
AACTATTTCCATTGACGCTACTGAT
LOC_Os02g33420
Os.24851.1.S1_at--1103--6171Chr02:19858307..19858331 (25 bp)
GAGGAGCTTCAAAGCGACTCGGATA
LOC_Os02g33420
Os.24851.1.S1_at--115--691Chr02:19858335..19858359 (25 bp)
ATGACGATGTGTTCGAGATCGCCCC
LOC_Os02g33420
Os.24851.1.S1_at--573--4471Chr02:19858403..19858427 (25 bp)
GCCTGACAAGTAGCTAGGTTGCCAC
LOC_Os02g33420
Os.24851.1.S1_at--288--7831Chr02:19858419..19858443 (25 bp)
GGTTGCCACTTTTGGGTTATCCATA
LOC_Os02g33420
Os.24851.1.S1_at--475--10051Chr02:19858468..19858492 (25 bp)
TAGTATCTCCTTTAGCTTGAACTTA
LOC_Os02g33420
Os.24851.1.S1_at--1107--5451Chr02:19858486..19858510 (25 bp)
GAACTTATGCCGGTTTTAGCCAGTG
LOC_Os02g33420
Os.24851.1.S1_at--956--7451Chr02:19858517..19858541 (25 bp)
GTGTCTGTGAGAACTCGCGACTCAT
LOC_Os02g33420
Os.24851.1.S1_at--67--8311Chr02:19858574..19858598 (25 bp)
GGCTTTCCTCCATGACGCTGTAAGA
LOC_Os02g33420
Os.24851.1.S1_at--161--5771Chr02:19858608..19858632 (25 bp)
GACGACCTGATGTCCTTAATGCATG
LOC_Os02g33420
Target Sequence 
TGTGATGACAAAGCTCTCTGAGATGCTTATTACAGGAGATGCTGGACAGGGGTCAACTATTTCCATTGACGCTACTGATG
ACAAGAAGGGGCTGAACTTTCAAGTATTGAAGGAGGAGGTAGTGGTTCCGCGAGGCAAGAGGCCAGTCGAGGAGCTTCAA
AGCGACTCGGATAGCGATGACGATGTGTTCGAGATCGCCCCCNATACCAAAGAGGAAGAAAGGTGATTATTAGCATATAG
GAGCAGCCTGACAAGTAGCTAGGTTGCCACTTTTGGGTTATCCATATTATATTAGTGAATTGCAACATGGNTAGTATCTC
CTTTAGCTTGAACTTATGCCGGTTTTAGCCAGTGGGCGTTGTGTCTGTGAGAACTCGCGACTCATATGGTAAGGAGGGCT
NGCTTGCTTGCTTGCNTCGGCTTTCCTCCATGACGCTGTAAGAGCTGAATGAGACGACCTGATGTCCTTAATGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24851.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis