Browse Element(s) Details


Os.12196.1.S1_at

Description gb:AK068919.1
DB_XREF= gi:32978943
TID=Os.12196.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.12196 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-037-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013170F14, full insert sequence.
FL= gb:AK104703.1 gb:AK068919.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g334509/112-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33420Os.24851.1.S1_at11/112+19854206..19858642ATPase, AAA family protein, expressed
LOC_Os02g33430Os.423.1.S1_a_at11/112+19862332..19867439E2F protein, putative, expressed
LOC_Os02g33440NANA2+19872435..19872855hypothetical protein
LOC_Os02g33450OsAffx.2841.1.S1_at9/112+19876213..198798822-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
LOC_Os02g33450Os.12196.1.S1_at9/112+19876213..198798822-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
LOC_Os02g33460NANA2+19889442..19892996transposon protein, putative, Mutator sub-class
LOC_Os02g33470NANA2+19898922..19901092transposon protein, putative, Pong sub-class
LOC_Os02g33480NANA2+19901504..19902847transposon protein, putative, Pong sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0010231biological_processmaintenance of dormancy
GO:0008379molecular_functionthioredoxin peroxidase activity
GO:0016209molecular_functionantioxidant activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12196.1.S1_at--482--3171NONE
AATTGACAGTGTGTTCTCCCATCTT
NONE
Os.12196.1.S1_at--343--10751NONE
TTGACAGTGTGTTCTCCCATCTTGC
NONE
Os.12196.1.S1_at--256--8751Chr02:19879686..19879710 (25 bp)
TGTAGGGAGTTTTTTTGCTTTCGCG
LOC_Os02g33450
Os.12196.1.S1_at--592--10391Chr02:19879698..19879722 (25 bp)
TTTTGCTTTCGCGAGAGCCATTGCG
LOC_Os02g33450
Os.12196.1.S1_at--533--10291Chr02:19879704..19879728 (25 bp)
TTTCGCGAGAGCCATTGCGTTTCGT
LOC_Os02g33450
Os.12196.1.S1_at--104--2071Chr02:19879772..19879796 (25 bp)
ACTTGTTCGCCACCAGCTGTTACTT
LOC_Os02g33450
Os.12196.1.S1_at--864--10771Chr02:19879774..19879798 (25 bp)
TTGTTCGCCACCAGCTGTTACTTTG
LOC_Os02g33450
Os.12196.1.S1_at--158--3371Chr02:19879785..19879809 (25 bp)
CAGCTGTTACTTTGTTCCCTAACAA
LOC_Os02g33450
Os.12196.1.S1_at--860--10771Chr02:19879796..19879820 (25 bp)
TTGTTCCCTAACAAATAAGGCTTTG
LOC_Os02g33450
Os.12196.1.S1_at--98--6811Chr02:19879820..19879844 (25 bp)
GTTTTGGTCGTGTTATACATGTATA
LOC_Os02g33450
Os.12196.1.S1_at--321--2111Chr02:19879836..19879860 (25 bp)
ACATGTATACATGTTAGTGCGTTTC
LOC_Os02g33450
Target Sequence 
AATTGACAGTGTGTTCTCCCATCTTGCATGGGTGCAGACAGACAGGAAATCTGGTGGGCTTGGTGATCTGAAATACCCAT
TGATTTCAGATGTTACTAAATCAATTTCGAAGTCCTTTGGTGTCTTGATCCCTGACCAGGGAATTGCTCTGAGAGGACTT
TTCATCATTGACAAGGAGGGAGTGATTCAGCACTCTACCATTAACAACCTTGCCATTGGACGCAGTGTAGATGAGACCAT
GAGGACCCTTCAGGCGTTGCAGTACGTCCAGGACAACCCGGACGAGGTGTGCCCGGCCGGATGGAAGCCCGGTGACAAGT
CGATGAAGCCTGACCCCAAGGGAAGCAAGGAGTACTTCGCGGCCATCTAAGCACACATATGCATATGCCTGGTGATGGAT
GTAGGGAGTTTTTTTGCTTTCGCGAGAGCCATTGCGTTTCGTCTCCAAAGTGTAGTACCGTGTGCTCGTCTGATCGGATT
TTGTTACTTGTTCGCCACCAGCTGTTACTTTGTTCCCTAACAAATAAGGCTTTGTTTTGGTCGTGTTATACATGTATACA
TGTTAGTGCGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12196.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis