Browse Element(s) Details


Os.51460.1.S1_at

Description gb:AK062855.1
DB_XREF= gi:32972873
TID=Os.51460.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51460 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-108-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-A08, full insert sequence.
FL= gb:AK062855.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3338011/11pectinesterase inhibitor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33340NANA2+19802054..19806078retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g33350OsAffx.2838.1.S1_at11/112+19813045..19814436hypothetical protein
LOC_Os02g33350OsAffx.12334.1.S1_at1/112+19813045..19814436hypothetical protein
LOC_Os02g33360OsAffx.22699.1.S1_x_at3/112+19814820..19821186retrotransposon protein, putative, unclassified
LOC_Os02g33360OsAffx.18275.1.S1_x_at1/112+19814820..19821186retrotransposon protein, putative, unclassified
LOC_Os02g33370NANA2+19822450..19825931hypothetical protein
LOC_Os02g33380Os.51460.1.S1_at11/112+19828413..19829214pectinesterase inhibitor domain containing protein, expressed
LOC_Os02g33390NANA2+19832399..19832950pectinesterase inhibitor domain containing protein
LOC_Os02g33400Os.5865.1.S1_at11/112+19836322..19839251F-box domain containing protein, expressed
LOC_Os02g33410OsAffx.2840.1.S1_at11/112+19842261..19843365hypothetical protein
LOC_Os02g33420Os.24851.1.S1_at11/112+19854206..19858642ATPase, AAA family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51460.1.S1_at--172--5651Chr02:19828621..19828645 (25 bp)
GACAGGCGCGTGGACTACGAGTTCT
LOC_Os02g33380
Os.51460.1.S1_at--208--9951Chr02:19828636..19828660 (25 bp)
TACGAGTTCTGCGTGTCGCGGCTGA
LOC_Os02g33380
Os.51460.1.S1_at--862--4011Chr02:19828844..19828868 (25 bp)
CGTTCGCGGCGGCTTACGACGACAT
LOC_Os02g33380
Os.51460.1.S1_at--315--2231Chr02:19829052..19829076 (25 bp)
ACAAGTGTTGTTTCCTTCGCTTAAT
LOC_Os02g33380
Os.51460.1.S1_at--499--6851Chr02:19829061..19829085 (25 bp)
GTTTCCTTCGCTTAATGCAGGTTAA
LOC_Os02g33380
Os.51460.1.S1_at--123--3671Chr02:19829087..19829111 (25 bp)
CTTAGAGGAATAAACGAGCGCCATT
LOC_Os02g33380
Os.51460.1.S1_at--8--5891Chr02:19829102..19829126 (25 bp)
GAGCGCCATTGTTGATTTCTCGTCT
LOC_Os02g33380
Os.51460.1.S1_at--688--51Chr02:19829109..19829133 (25 bp)
ATTGTTGATTTCTCGTCTGCTCGAT
LOC_Os02g33380
Os.51460.1.S1_at--670--7171Chr02:19829123..19829147 (25 bp)
GTCTGCTCGATCGTTCGATTGCTAC
LOC_Os02g33380
Os.51460.1.S1_at--740--6711Chr02:19829135..19829159 (25 bp)
GTTCGATTGCTACGCATGTACTAGT
LOC_Os02g33380
Os.51460.1.S1_at--711--9531Chr02:19829174..19829198 (25 bp)
TCTAGAGGAATAAACGAGCGACATT
LOC_Os02g33380
Target Sequence 
GACAGGCGCGTGGACTACGAGTTCTGCGTGTCGCGGCTGAGCCACCACCACGACAGCCCCGACGCGGACACGTGGGGGCT
GGCCAAGGTGGCGGCCGACGTCGGCGTCTGCATCGCCGGCGACGCGGCGTACGACGCCAAGGCGAAGCTGCAGGCCGCCA
AGGCGGGCGGCGAGCGGGAGGCGCTGGAGCGGTGCGCGGAGCTGTACGACCGGATGGGGTCGGCGTTCGCGGCGGCTTAC
GACGACATCAACCGGCGCGAGTACGCGGCGGGGAAGGAGAAGGCCGGGGAGGCGGCGTCGCTCGCGCGGCGGTGCGACGG
CGCCTTCGCCGACGCCGGCGTCGCCCCGTCGCCGCTCGAGCGGCAGACCGCGGAGTCCGTCAAGATCGCCATCGTCTGCA
CGGCCATCACCAACCTCGTCAAGTAGACGAAACAAGTGTTGTTTCCTTCGCTTAATGCAGGTTAATCTTAGAGGAATAAA
CGAGCGCCATTGTTGATTTCTCGTCTGCTCGATCGTTCGATTGCTACGCATGTACTAGTAGTAGCTAGGTTAATCTAGAG
GAATAAACGAGCGACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51460.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis