Browse Element(s) Details


Os.55352.1.S1_x_at

Description gb:AK107922.1
DB_XREF= gi:32993131
TID=Os.55352.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55352 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-H05, full insert sequence.
FL= gb:AK107922.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3329011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33240OsAffx.12331.1.S1_at11/112+19752459..19753496F-box domain containing protein, expressed
LOC_Os02g33250NANA2+19759364..19759774hypothetical protein
LOC_Os02g33260NANA2+19761712..19764578retrotransposon protein, putative, unclassified
LOC_Os02g33270OsAffx.940.1.S1_x_at1/112+19765434..19767521retrotransposon protein, putative, unclassified
LOC_Os02g33270OsAffx.22896.1.S1_x_at1/112+19765434..19767521retrotransposon protein, putative, unclassified
LOC_Os02g33280OsAffx.22722.1.S1_x_at1/112+19769557..19774224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g33280OsAffx.22722.1.S1_at1/112+19769557..19774224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g33280OsAffx.1646.1.S1_x_at1/112+19769557..19774224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g33290Os.55352.1.S1_x_at11/112+19775905..19777735expressed protein
LOC_Os02g33300OsAffx.12333.1.S1_x_at11/112+19779468..19779782hypothetical protein
LOC_Os02g33310OsAffx.12334.1.S1_at11/112+19783277..19785110F-box domain containing protein
LOC_Os02g33320Os.50218.1.S1_at11/112+19785512..19790341RNA recognition motif family protein, expressed
LOC_Os02g33330Os.6723.1.S1_s_at11/112+19791948..19792850B-type cyclin, putative, expressed
LOC_Os02g33330Os.6723.1.S1_at11/112+19791948..19792850B-type cyclin, putative, expressed
LOC_Os02g33340NANA2+19802054..19806078retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55352.1.S1_x_at--233--7011Chr02:19776948..19776972 (25 bp)
GTACTTATAGTCACATCCCAGCTTG
LOC_Os02g33290
Os.55352.1.S1_x_at--956--6611Chr02:19776998..19777022 (25 bp)
GTTGGAATCTACGTCTCACAAGCAG
LOC_Os02g33290
Os.55352.1.S1_x_at--205--8911Chr02:19777262..19777286 (25 bp)
TGAGCACATCCAGAATCTTCAGCAA
LOC_Os02g33290
Os.55352.1.S1_x_at--820--2231Chr02:19777286..19777310 (25 bp)
ACAATTGCTGCAATGCCGTGTCAAT
LOC_Os02g33290
Os.55352.1.S1_x_at--734--10091Chr02:19777313..19777337 (25 bp)
TAGGACGGCCAATTCTTCTGGATCT
LOC_Os02g33290
Os.55352.1.S1_x_at--778--9571Chr02:19777326..19777350 (25 bp)
TCTTCTGGATCTTCTTTGACATCAT
LOC_Os02g33290
Os.55352.1.S1_x_at--1139--8371Chr02:19777395..19777419 (25 bp)
GGCGAGAAGCCGACGAACCATGTAT
LOC_Os02g33290
Os.55352.1.S1_x_at--547--3031Chr02:19777423..19777447 (25 bp)
AATCCAGTGGGATGTGCGATTCCAG
LOC_Os02g33290
Os.55352.1.S1_x_at--1025--7211Chr02:19777436..19777460 (25 bp)
GTGCGATTCCAGATCGTACCGGTAG
LOC_Os02g33290
Os.55352.1.S1_x_at--317--6991Chr02:19777451..19777475 (25 bp)
GTACCGGTAGTCATTTCTCCTAGAA
LOC_Os02g33290
Os.55352.1.S1_x_at--128--5851Chr02:19777593..19777617 (25 bp)
GACCTTTGTATGTCTATTCAGTTAT
LOC_Os02g33290
Target Sequence 
GTACTTATAGTCACATCCCAGCTTGAATGGAAGCAACAACTTGTTAATGAGTTGGAATCTACGTCTCACAAGCAGAAACA
TATTTCAAGTAGAGGAGAACTTGTCAAGGAAANGATAATCTTATCTCAAGAAAAGATGATTCGGCTATTGAATGAGCACA
TCCAGAATCTTCAGCAACAATTGCTGCAATGCCGTGTCAATAATAGGACGGCCAATTCTTCTGGATCTTCTTTGACATCA
TATATTGGTGAGATCCAAAGGCAGCAGATGATGGATGATTGATAAGGCGAGAAGCCGACGAACCATGTATAACAATCCAG
TGGGATGTGCGATTCCAGATCGTACCGGTAGTCATTTCTCCTAGAAATGATGTAGTGTTAGTCTGTATAGAATAGTGATA
TAGTCAAAGCAAAGGACAAGGCTTTGTCGATTAAAAGAACATTGGTTTAACAGGATTAAATTCATTTTCTTTACTCATAA
GTAGACCTTTGTATGTCTATTCAGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55352.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis