Browse Element(s) Details


OsAffx.12331.1.S1_at

Description tigr:9630.m03156
TID=OsAffx.12331.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3324011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33190NANA2+19728096..19729943retrotransposon protein, putative, unclassified
LOC_Os02g33200OsAffx.21171.4.S1_x_at3/112+19734633..19736120retrotransposon protein, putative, unclassified
LOC_Os02g33200OsAffx.21171.4.S1_at2/112+19734633..19736120retrotransposon protein, putative, unclassified
LOC_Os02g33210NANA2+19736765..19738739retrotransposon protein, putative, unclassified
LOC_Os02g33220OsAffx.12330.1.S1_at11/112+19743026..19743475hypothetical protein
LOC_Os02g33230Os.15046.1.S1_at11/112+19744245..19749130expressed protein
LOC_Os02g33240OsAffx.12331.1.S1_at11/112+19752459..19753496F-box domain containing protein, expressed
LOC_Os02g33250NANA2+19759364..19759774hypothetical protein
LOC_Os02g33260NANA2+19761712..19764578retrotransposon protein, putative, unclassified
LOC_Os02g33270OsAffx.940.1.S1_x_at1/112+19765434..19767521retrotransposon protein, putative, unclassified
LOC_Os02g33270OsAffx.22896.1.S1_x_at1/112+19765434..19767521retrotransposon protein, putative, unclassified
LOC_Os02g33280OsAffx.22722.1.S1_x_at1/112+19769557..19774224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g33280OsAffx.22722.1.S1_at1/112+19769557..19774224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g33280OsAffx.1646.1.S1_x_at1/112+19769557..19774224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g33290Os.55352.1.S1_x_at11/112+19775905..19777735expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12331.1.S1_at--1075--5891Chr02:19752884..19752908 (25 bp)
GAGCTGAGCTGGATCTTGCTGGACC
LOC_Os02g33240
OsAffx.12331.1.S1_at--660--8911Chr02:19752880..19752904 (25 bp)
TGAGCTGGATCTTGCTGGACCCGAG
LOC_Os02g33240
OsAffx.12331.1.S1_at--153--7971Chr02:19752874..19752898 (25 bp)
GGATCTTGCTGGACCCGAGCACCGG
LOC_Os02g33240
OsAffx.12331.1.S1_at--1035--4591Chr02:19752790..19752814 (25 bp)
GCGACACGCTGGTGCGCTACGCCGT
LOC_Os02g33240
OsAffx.12331.1.S1_at--316--7731Chr02:19752754..19752778 (25 bp)
GGTGCAAGTTCGAGGCCACCGTCAG
LOC_Os02g33240
OsAffx.12331.1.S1_at--1118--6211Chr02:19752743..19752767 (25 bp)
GAGGCCACCGTCAGCTGCTCGGAGG
LOC_Os02g33240
OsAffx.12331.1.S1_at--536--4471Chr02:19752716..19752740 (25 bp)
GCCGGCCAGATAACGGAGGTCAGCC
LOC_Os02g33240
OsAffx.12331.1.S1_at--302--4411Chr02:19752712..19752736 (25 bp)
GCCAGATAACGGAGGTCAGCCTCGC
LOC_Os02g33240
OsAffx.12331.1.S1_at--665--2651Chr02:19752583..19752607 (25 bp)
AAGCCAAGAGGAGGTACGACGAGTT
LOC_Os02g33240
OsAffx.12331.1.S1_at--1078--8191Chr02:19752538..19752562 (25 bp)
GGAAGGAGTCCAAGGCCAGGCGAGA
LOC_Os02g33240
OsAffx.12331.1.S1_at--196--4391Chr02:19752529..19752553 (25 bp)
CCAAGGCCAGGCGAGAGGTGCTCGT
LOC_Os02g33240
Target Sequence 
GAGCTGAGCTGGATCTTGCTGGACCCGAGCACCGGCCGGGCGGTGAACGTGTCGAGCCGGCGACCCGTGGCGGTGGAGAG
GCACTGGTACACCGGCGACACGCTGGTGCGCTACGCCGTGGTGCTCGCCGGGTGCAAGTTCGAGGCCACCGTCAGCTGCT
CGGAGGAGGCCGGCCAGATAACGGAGGTCAGCCTCGCCGCCGACGACGCCGACGGCGCGGCGATCAGCGGCGAGGGCTGC
CTGCGGCTGCTCGCCGCGGCCATGGCCGGGCCACGGAAGGGAGGGCGGGGCCAGGAAGGGGAAGCCAAGAGGAGGTACGA
CGAGTTCGTGAGGAGGAAGAGGGGCAGGAAGGAGTCCAAGGCCAGGCGAGAGGTGCTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12331.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis