Browse Element(s) Details


Os.15046.1.S1_at

Description gb:AK073473.1
DB_XREF= gi:32983496
TID=Os.15046.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15046 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033045C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033045C05, full insert sequence.
FL= gb:AK073473.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3323011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33180OsAffx.24554.1.S1_s_at11/112+19721252..19724020Rar1, putative, expressed
LOC_Os02g33180Os.4686.1.S1_at11/112+19721252..19724020Rar1, putative, expressed
LOC_Os02g33180OsAffx.24554.1.S1_at8/112+19721252..19724020Rar1, putative, expressed
LOC_Os02g33190NANA2+19728096..19729943retrotransposon protein, putative, unclassified
LOC_Os02g33200OsAffx.21171.4.S1_x_at3/112+19734633..19736120retrotransposon protein, putative, unclassified
LOC_Os02g33200OsAffx.21171.4.S1_at2/112+19734633..19736120retrotransposon protein, putative, unclassified
LOC_Os02g33210NANA2+19736765..19738739retrotransposon protein, putative, unclassified
LOC_Os02g33220OsAffx.12330.1.S1_at11/112+19743026..19743475hypothetical protein
LOC_Os02g33230Os.15046.1.S1_at11/112+19744245..19749130expressed protein
LOC_Os02g33240OsAffx.12331.1.S1_at11/112+19752459..19753496F-box domain containing protein, expressed
LOC_Os02g33250NANA2+19759364..19759774hypothetical protein
LOC_Os02g33260NANA2+19761712..19764578retrotransposon protein, putative, unclassified
LOC_Os02g33270OsAffx.940.1.S1_x_at1/112+19765434..19767521retrotransposon protein, putative, unclassified
LOC_Os02g33270OsAffx.22896.1.S1_x_at1/112+19765434..19767521retrotransposon protein, putative, unclassified
LOC_Os02g33280OsAffx.22722.1.S1_x_at1/112+19769557..19774224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g33280OsAffx.22722.1.S1_at1/112+19769557..19774224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g33280OsAffx.1646.1.S1_x_at1/112+19769557..19774224retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15046.1.S1_at--793--5411Chr02:19747821..19747845 (25 bp)
GAAGCCTGTTTACGTCATTGGGACT
LOC_Os02g33230
Os.15046.1.S1_at--213--6811Chr02:19747863..19747887 (25 bp)
GTTTTCTGCTTTTCACAAGACTCTA
LOC_Os02g33230
Os.15046.1.S1_at--311--8711Chr02:19747902..19747926 (25 bp)
TGTCCGTCCTTTCACTGGATTGGAA
LOC_Os02g33230
Os.15046.1.S1_at--482--4291Chr02:19748741..19748765 (25 bp)
CCTCCCCTAAACGATGCTATTGAAG
LOC_Os02g33230
Os.15046.1.S1_at--900--51Chr02:19748759..19748783 (25 bp)
ATTGAAGTAGCTACACGTGTCCGTG
LOC_Os02g33230
Os.15046.1.S1_at--273--10091Chr02:19748829..19748853 (25 bp)
TAGGATGTGTTGTTCTGTCCGACAG
LOC_Os02g33230
Os.15046.1.S1_at--921--10691Chr02:19748947..19748971 (25 bp)
TTGAGCCTTTTCTTTTGGTGGTATA
LOC_Os02g33230
Os.15046.1.S1_at--777--7851Chr02:19748966..19748990 (25 bp)
GGTATACCCCAATTTTGGAGCCATT
LOC_Os02g33230
Os.15046.1.S1_at--191--8511Chr02:19748981..19749005 (25 bp)
TGGAGCCATTGCACAGCACCCAGGA
LOC_Os02g33230
Os.15046.1.S1_at--971--10371Chr02:19749012..19749036 (25 bp)
TTTTGGTTTGAGATTCTCTTCCCTC
LOC_Os02g33230
Os.15046.1.S1_at--492--10811Chr02:19749037..19749061 (25 bp)
TTGTACTTCTAACGCTACTGGAGAG
LOC_Os02g33230
Target Sequence 
GAAGCCTGTTTACGTCATTGGGACTGAGTATTGTAAATGGAAGTTTTCTGCTTTTCACAAGACTCTACGGGAGCGAGGAG
TTGTCCGTCCTTTCACTGGATTGGAAGATATTTCAAATAGCTGGAGCTACCCTCCCCTAAACGATGCTATTGAAGTAGCT
ACACGTGTCCGTGAAGCNATTGCAGAACGAGGGTGGTCTGTGGGATGATAGNGACAGTTAGGATGTGTTGTTCTGTCCGA
CAGTAAATTATGTAGTTTGATTAACACAGTCACTTAAATTCAAGTTACATTGTTCAGAGGAAGAATAATATAGCCATGGA
ATGGCCTGTACAAAAGTTGAGCCTTTTCTTTTGGTGGTATACCCCAATTTTGGAGCCATTGCACAGCACCCAGGAGATCN
TTTTTGGTTTGAGATTCTCTTCCCTCNNNTTGTACTTCTAACGCTACTGGAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15046.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis