Browse Element(s) Details


OsAffx.24554.1.S1_s_at

Description tigr:9630.m03150
TID=OsAffx.24554.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AF254799 Rar1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3318011/11Rar1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33120OsAffx.24551.1.S1_at11/112+19697600..19698067protein phosphatase 2C, putative
LOC_Os02g33130OsAffx.24552.1.S1_at11/112+19702791..19703462pectinesterase inhibitor domain containing protein, expressed
LOC_Os02g33140Os.9197.1.S1_at11/112+19704439..1970760040S ribosomal protein S14, putative, expressed
LOC_Os02g33150OsAffx.12328.1.S1_at11/112+19708656..19712863expressed protein
LOC_Os02g33160OsAffx.13041.1.S1_x_at3/112+19716165..19716922transposon protein, putative, unclassified
LOC_Os02g33160OsAffx.13041.1.S1_at1/112+19716165..19716922transposon protein, putative, unclassified
LOC_Os02g33160Os.28110.1.S1_x_at1/112+19716165..19716922transposon protein, putative, unclassified
LOC_Os02g33170NANA2+19718014..19718704hypothetical protein
LOC_Os02g33180OsAffx.24554.1.S1_s_at11/112+19721252..19724020Rar1, putative, expressed
LOC_Os02g33180Os.4686.1.S1_at11/112+19721252..19724020Rar1, putative, expressed
LOC_Os02g33180OsAffx.24554.1.S1_at8/112+19721252..19724020Rar1, putative, expressed
LOC_Os02g33190NANA2+19728096..19729943retrotransposon protein, putative, unclassified
LOC_Os02g33200OsAffx.21171.4.S1_x_at3/112+19734633..19736120retrotransposon protein, putative, unclassified
LOC_Os02g33200OsAffx.21171.4.S1_at2/112+19734633..19736120retrotransposon protein, putative, unclassified
LOC_Os02g33210NANA2+19736765..19738739retrotransposon protein, putative, unclassified
LOC_Os02g33220OsAffx.12330.1.S1_at11/112+19743026..19743475hypothetical protein
LOC_Os02g33230Os.15046.1.S1_at11/112+19744245..19749130expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009817biological_processdefense response to pathogenic fungi, incompatible interaction
GO:0050821biological_processprotein stabilization
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24554.1.S1_s_at--1106--8091Chr02:19722544..19722565 (22 bp)
GGACCTATGTTTCATGATGGCATGA
LOC_Os02g33180
OsAffx.24554.1.S1_s_at--829--2351Chr02:19722495..19722519 (25 bp)
AAAGCCATGATTTTAGCCTATTTTT
LOC_Os02g33180
OsAffx.24554.1.S1_s_at--317--10211Chr02:19722481..19722501 (21 bp)
TATTTTTGGCTATTCCTGGGTGCAA
LOC_Os02g33180
OsAffx.24554.1.S1_s_at--793--2191Chr02:19722262..19722286 (25 bp)
ACAAAAGCAGTTCCTACTAAACCAT
LOC_Os02g33180
OsAffx.24554.1.S1_s_at--853--4491Chr02:19722177..19722201 (25 bp)
GCCGTCAAGGTTTCTTTTGCTCTGA
LOC_Os02g33180
OsAffx.24554.1.S1_s_at--998--10271Chr02:19721986..19722186 (25 bp)
TTTGCTCTGACCATGGATCACAACC
LOC_Os02g33180
OsAffx.24554.1.S1_s_at--355--9991Chr02:19721950..19721974 (25 bp)
TACCAACCGCTACCAGTGATACTAA
LOC_Os02g33180
OsAffx.24554.1.S1_s_at--1124--3491Chr02:19721925..19721949 (25 bp)
CATGGTACCTGTTGAGAAGCCTGCA
LOC_Os02g33180
OsAffx.24554.1.S1_s_at--859--5391Chr02:19721804..19721828 (25 bp)
GAAGCATGCGATTACCATCCAGGAC
LOC_Os02g33180
OsAffx.24554.1.S1_s_at--243--5031Chr02:19721777..19721801 (25 bp)
GCAGTTTTTCGCGACAGGATTAGAG
LOC_Os02g33180
OsAffx.24554.1.S1_s_at--967--5211Chr02:19721623..19721647 (25 bp)
GAATTTATGGAGATCCCTCCGTGCA
LOC_Os02g33180
Target Sequence 
GGACCTATGTTTCATGATGGCATGAAACAGTGGAGTTGCTGTAAGCAAAAAAGCCATGATTTTAGCCTATTTTTGGCTAT
TCCTGGGTGCAAAACTGGAAAGCACACAACTGAGAAACCAATCACAAAAGCAGTTCCTACTAAACCATCAAAGGCAGTTC
CAGTCCAGACTTCGAAGCAGAGTGTGGGAGCTGACACTTGCTCAAGGTGCCGTCAAGGTTTCTTTTGCTCTGACCATGGA
TCACAACCCAAGGCACAAATACCAACCGCTACCAGTGATACTAACATGGTACCTGTTGAGAAGCCTGCAGTTCCACCACC
AAAGAAAAAAATTGATCTGAATGAGCCTAGGGTTTGTAAGAACAAAGGATGTGGTAAAACCTACAAGGAGAAGGATAATC
ATGATGAAGCATGCGATTACCATCCAGGACCTGCAGTTTTTCGCGACAGGATTAGAGGGTGGAAATGTTGTGATATTCAT
GTCAAGGAATTTGATGAATTTATGGAGATCCCTCCGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24554.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis