Browse Element(s) Details


Os.4686.1.S1_at

Description gb:AK111881.1
DB_XREF= gi:37988544
TID=Os.4686.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4686 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033050A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033050A01, full insert sequence.
FL= gb:AK111881.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3318011/11Rar1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33120OsAffx.24551.1.S1_at11/112+19697600..19698067protein phosphatase 2C, putative
LOC_Os02g33130OsAffx.24552.1.S1_at11/112+19702791..19703462pectinesterase inhibitor domain containing protein, expressed
LOC_Os02g33140Os.9197.1.S1_at11/112+19704439..1970760040S ribosomal protein S14, putative, expressed
LOC_Os02g33150OsAffx.12328.1.S1_at11/112+19708656..19712863expressed protein
LOC_Os02g33160OsAffx.13041.1.S1_x_at3/112+19716165..19716922transposon protein, putative, unclassified
LOC_Os02g33160OsAffx.13041.1.S1_at1/112+19716165..19716922transposon protein, putative, unclassified
LOC_Os02g33160Os.28110.1.S1_x_at1/112+19716165..19716922transposon protein, putative, unclassified
LOC_Os02g33170NANA2+19718014..19718704hypothetical protein
LOC_Os02g33180OsAffx.24554.1.S1_s_at11/112+19721252..19724020Rar1, putative, expressed
LOC_Os02g33180Os.4686.1.S1_at11/112+19721252..19724020Rar1, putative, expressed
LOC_Os02g33180OsAffx.24554.1.S1_at8/112+19721252..19724020Rar1, putative, expressed
LOC_Os02g33190NANA2+19728096..19729943retrotransposon protein, putative, unclassified
LOC_Os02g33200OsAffx.21171.4.S1_x_at3/112+19734633..19736120retrotransposon protein, putative, unclassified
LOC_Os02g33200OsAffx.21171.4.S1_at2/112+19734633..19736120retrotransposon protein, putative, unclassified
LOC_Os02g33210NANA2+19736765..19738739retrotransposon protein, putative, unclassified
LOC_Os02g33220OsAffx.12330.1.S1_at11/112+19743026..19743475hypothetical protein
LOC_Os02g33230Os.15046.1.S1_at11/112+19744245..19749130expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009817biological_processdefense response to pathogenic fungi, incompatible interaction
GO:0050821biological_processprotein stabilization
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4686.1.S1_at--49--4751Chr02:19721581..19721605 (25 bp)
GCTGATGCCGCATGAATTTTCACCA
LOC_Os02g33180
Os.4686.1.S1_at--24--9671Chr02:19721562..19721586 (25 bp)
TCACCATGCCCCATCTTGGAATAAG
LOC_Os02g33180
Os.4686.1.S1_at--132--2911Chr02:19721523..19721547 (25 bp)
AAGGTTCTCTTGTATCTCGTAGTGC
LOC_Os02g33180
Os.4686.1.S1_at--428--1471Chr02:19721438..19721462 (25 bp)
AGAATAGGCTGTTTTACCGTGCTCT
LOC_Os02g33180
Os.4686.1.S1_at--537--10371Chr02:19721427..19721451 (25 bp)
TTTTACCGTGCTCTGTGTGACTGCT
LOC_Os02g33180
Os.4686.1.S1_at--1155--2852Chr03:25663845..25664079 (25 bp)
AAGTGTGCGTGGTGTTTCATTTTTT
NONE
Os.4686.1.S1_at--1140--2231Chr02:19721355..19721379 (25 bp)
AAATTGTGTGTGGAGACTTCGGTCT
LOC_Os02g33180
Os.4686.1.S1_at--988--1391Chr02:19721342..19721366 (25 bp)
AGACTTCGGTCTCGTTCGTTGGCTC
LOC_Os02g33180
Os.4686.1.S1_at--504--9391Chr02:19721327..19721351 (25 bp)
TCGTTGGCTCGTTGCCAATTCTTCA
LOC_Os02g33180
Os.4686.1.S1_at--715--4871Chr02:19721272..19721296 (25 bp)
GCTATCCTGCAGACTTTTGGTAACA
LOC_Os02g33180
Os.4686.1.S1_at--834--10771Chr02:19721256..19721280 (25 bp)
TTGGTAACACCCATCTTTCTGTTTA
LOC_Os02g33180
Target Sequence 
GCTGATGCCGCATGAATTTTCACCATGCCCCATCTTGGAATAAGAACCCTATTAGCATAAGGTTCTCTTGTATCTCGTAG
TGCATAAGGTGCAATTTTTATGGAGAATTTTACTTGGAGTTGGGGAGTGTGGCAAAGATACCGAGAATAGGCTGTTTTAC
CGTGCTCTGTGTGACTGCTGCAAAAGTGTGCGTGGTGTTTCATTTTTTGTCTGAAACGGGGACTTGAAATTGTGTGTGGA
GACTTCGGTCTCGTTCGTTGGCTCGTTGCCAATTCTTCATAGTTAGAAAATCAAATGCTCCATCTAAATGCTATCCTGCA
GACTTTTGGTAACACCCATCTTTCTGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4686.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis