Browse Element(s) Details


OsAffx.24554.1.S1_at

Description tigr:9630.m03150
TID=OsAffx.24554.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AF254799 Rar1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g331808/11Rar1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33120OsAffx.24551.1.S1_at11/112+19697600..19698067protein phosphatase 2C, putative
LOC_Os02g33130OsAffx.24552.1.S1_at11/112+19702791..19703462pectinesterase inhibitor domain containing protein, expressed
LOC_Os02g33140Os.9197.1.S1_at11/112+19704439..1970760040S ribosomal protein S14, putative, expressed
LOC_Os02g33150OsAffx.12328.1.S1_at11/112+19708656..19712863expressed protein
LOC_Os02g33160OsAffx.13041.1.S1_x_at3/112+19716165..19716922transposon protein, putative, unclassified
LOC_Os02g33160OsAffx.13041.1.S1_at1/112+19716165..19716922transposon protein, putative, unclassified
LOC_Os02g33160Os.28110.1.S1_x_at1/112+19716165..19716922transposon protein, putative, unclassified
LOC_Os02g33170NANA2+19718014..19718704hypothetical protein
LOC_Os02g33180OsAffx.24554.1.S1_s_at11/112+19721252..19724020Rar1, putative, expressed
LOC_Os02g33180Os.4686.1.S1_at11/112+19721252..19724020Rar1, putative, expressed
LOC_Os02g33180OsAffx.24554.1.S1_at8/112+19721252..19724020Rar1, putative, expressed
LOC_Os02g33190NANA2+19728096..19729943retrotransposon protein, putative, unclassified
LOC_Os02g33200OsAffx.21171.4.S1_x_at3/112+19734633..19736120retrotransposon protein, putative, unclassified
LOC_Os02g33200OsAffx.21171.4.S1_at2/112+19734633..19736120retrotransposon protein, putative, unclassified
LOC_Os02g33210NANA2+19736765..19738739retrotransposon protein, putative, unclassified
LOC_Os02g33220OsAffx.12330.1.S1_at11/112+19743026..19743475hypothetical protein
LOC_Os02g33230Os.15046.1.S1_at11/112+19744245..19749130expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009817biological_processdefense response to pathogenic fungi, incompatible interaction
GO:0050821biological_processprotein stabilization
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24554.1.S1_at--933--8211Chr02:19723195..19723219 (25 bp)
GGCAAAGAACTACCTTTCCCTTCAG
LOC_Os02g33180
OsAffx.24554.1.S1_at--157--1431Chr02:19723191..19723214 (24 bp)
AGAACTACCTTTCCCTTCAGAGAGG
LOC_Os02g33180
OsAffx.24554.1.S1_at--995--9931NONE
TACCTTTCCCTTCAGAGAGGACCTA
NONE
OsAffx.24554.1.S1_at--509--10291NONE
TTTCCCTTCAGAGAGGACCTATGTT
NONE
OsAffx.24554.1.S1_at--477--4311NONE
CCTTCAGAGAGGACCTATGTTTCAT
NONE
OsAffx.24554.1.S1_at--1012--9211Chr02:19722227..19722251 (25 bp)
TCCAGTCCAGACTTCGAAGCAGAGT
LOC_Os02g33180
OsAffx.24554.1.S1_at--21--1151Chr02:19722224..19722248 (25 bp)
AGTCCAGACTTCGAAGCAGAGTGTG
LOC_Os02g33180
OsAffx.24554.1.S1_at--1074--4331Chr02:19722221..19722245 (25 bp)
CCAGACTTCGAAGCAGAGTGTGGGA
LOC_Os02g33180
OsAffx.24554.1.S1_at--79--6131Chr02:19722206..19722230 (25 bp)
GAGTGTGGGAGCTGACACTTGCTCA
LOC_Os02g33180
OsAffx.24554.1.S1_at--366--7491Chr02:19722202..19722226 (25 bp)
GTGGGAGCTGACACTTGCTCAAGGT
LOC_Os02g33180
OsAffx.24554.1.S1_at--681--1591Chr02:19722197..19722221 (25 bp)
AGCTGACACTTGCTCAAGGTGCCGT
LOC_Os02g33180
Target Sequence 
GGCAAAGAACTACCTTTCCCTTCAGAGAGGACCTATGTTTCATGATGGCATGAAACAGTGGAGTTGCTGTAAGCAAAAAA
GCCATGATTTTAGCCTATTTTTGGCTATTCCTGGGTGCAAAACTGGAAAGCACACAACTGAGAAACCAATCACAAAAGCA
GTTCCTACTAAACCATCAAAGGCAGTTCCAGTCCAGACTTCGAAGCAGAGTGTGGGAGCTGACACTTGCTCAAGGTGCCG
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24554.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis