Browse Element(s) Details


Os.37127.1.A1_at

Description gb:AK060594.1
DB_XREF= gi:32970612
TID=Os.37127.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37127 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative condensin complex subunit (OJ1619_F12.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-024-F04, full insert sequence.
FL= gb:AK060594.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3487010/11Barren protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34830OsAffx.23514.4.S1_at10/111+19556334..19559767hypothetical protein
LOC_Os01g34840NANA1+19563216..19566835retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g34850Os.19896.2.S1_x_at11/111+19568889..19570698Cation transport protein, expressed
LOC_Os01g34850Os.57530.1.S1_x_at6/111+19568889..19570698Cation transport protein, expressed
LOC_Os01g34860Os.53856.1.S1_at11/111+19572000..19575033expressed protein
LOC_Os01g34860OsAffx.5148.1.S1_x_at4/111+19572000..19575033expressed protein
LOC_Os01g34870Os.37127.1.A1_at10/111+19579739..19584249Barren protein, expressed
LOC_Os01g34880OsAffx.21286.1.S1_at9/111+19585422..19587686glycosyl transferase family 48 protein, putative, expressed
LOC_Os01g34890OsAffx.21285.2.S1_at11/111+19591311..19607305glycosyl transferase family 48 protein, putative
LOC_Os01g34890Os.20183.1.S1_at1/111+19591311..19607305glycosyl transferase family 48 protein, putative
LOC_Os01g34900OsAffx.27867.1.S1_s_at2/111+19608274..19609113glycosyl transferase family 48 protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37127.1.A1_at--567--8511Chr01:19582876..19582900 (25 bp)
TGGAATCACATCAATACATCTGCTG
LOC_Os01g34870
Os.37127.1.A1_at--1050--9111NONE
TGCTGACACTGATGACCTGCAGGAA
NONE
Os.37127.1.A1_at--608--1791Chr01:19583828..19583852 (25 bp)
ACCCCTGTGCCTATCGAAAGTATTG
LOC_Os01g34870
Os.37127.1.A1_at--849--2791Chr01:19583854..19583878 (25 bp)
AAGATCTTCCAAGCTGCAACCCTGA
LOC_Os01g34870
Os.37127.1.A1_at--526--2451Chr01:19583888..19583912 (25 bp)
AACAGAAATTTCACCGCACCTATAT
LOC_Os01g34870
Os.37127.1.A1_at--310--3371Chr01:19583904..19583928 (25 bp)
CACCTATATTTCATTTGCCTCTTGC
LOC_Os01g34870
Os.37127.1.A1_at--1162--2991Chr01:19583937..19583961 (25 bp)
AATGAGCACAGCTTGACCTTACGTG
LOC_Os01g34870
Os.37127.1.A1_at--916--5831Chr01:19583951..19583975 (25 bp)
GACCTTACGTGATCGTCCAACATTG
LOC_Os01g34870
Os.37127.1.A1_at--1081--5671Chr01:19583985..19584009 (25 bp)
GACATATACATTCCTGCTTCATCTC
LOC_Os01g34870
Os.37127.1.A1_at--303--3551Chr01:19584004..19584028 (25 bp)
CATCTCTCGTGAAGTAATCCTGTAG
LOC_Os01g34870
Os.37127.1.A1_at--572--8131Chr01:19584071..19584095 (25 bp)
GGACTTCTCGTTCTCGGTGTATTAT
LOC_Os01g34870
Target Sequence 
TGGAATCACATCAATACATCTGCTGACACTGATGACCTGCAGGAAGACAAGGACACAGAATCACCCCTGTGCCTATCGAA
AGTATTGCAAGATCTTCCAAGCTGCAACCCTGATGCTGCAGCAACAGAAATTTCACCGCACCTATATTTCATTTGCCTCT
TGCATTTGGCAAATGAGCACAGCTTGACCTTACGTGATCGTCCAACATTGGATGAAATTGACATATACATTCCTGCTTCA
TCTCTCGTGAAGTAATCCTGTAGTTCAATATGTTGTGCATGTTTGTTTTATTTTTTGTTGGTTAGGGACTTCTCGTTCTC
GGTGTATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37127.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis