Browse Element(s) Details


OsAffx.28177.1.S1_at

Description tigr:9634.m04754
TID=OsAffx.28177.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4883010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48790OsAffx.5148.1.S1_x_at11/116+29529047..29532722hypothetical protein
LOC_Os06g48790OsAffx.19937.1.S1_at1/116+29529047..29532722hypothetical protein
LOC_Os06g48800Os.57530.1.S1_at11/116+29533236..29535555Cation transport protein, expressed
LOC_Os06g48800Os.57530.1.S1_x_at11/116+29533236..29535555Cation transport protein, expressed
LOC_Os06g48800Os.19896.2.S1_x_at8/116+29533236..29535555Cation transport protein, expressed
LOC_Os06g48810Os.2617.2.S1_a_at11/116+29537942..29540221high-affinity sodium transporter, putative, expressed
LOC_Os06g48820NANA6+29546213..29546692retrotransposon protein, putative, LINE subclass
LOC_Os06g48830OsAffx.28177.1.S1_at10/116+29553260..29554030hypothetical protein
LOC_Os06g48839NANA6+29557416..29558207NA
LOC_Os06g48850NANA6+29576976..29577380Auxin responsive protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28177.1.S1_at--677--7591Chr06:29553959..29553983 (25 bp)
GGGCACAGAGCTCCTCATCATCATG
LOC_Os06g48830
OsAffx.28177.1.S1_at--3--1591Chr06:29553951..29553975 (25 bp)
AGCTCCTCATCATCATGACGAGACA
LOC_Os06g48830
OsAffx.28177.1.S1_at--1058--3553Chr06:29553941..29553965 (25 bp)
CATCATGACGAGACAGGGCATACCT
LOC_Os06g48830
OsAffx.28177.1.S1_at--677--9611Chr06:29553912..29553936 (25 bp)
TCATGCCGCCTGACATGAGCTCGGG
LOC_Os06g48830
OsAffx.28177.1.S1_at--1097--7791Chr06:29553386..29553872 (25 bp)
GGTCGCAGACCGGTCACAGGCTTTT
LOC_Os06g48830
OsAffx.28177.1.S1_at--370--1391NONE
AGACCGGTCACAGGCTTTTGAAATT
NONE
OsAffx.28177.1.S1_at--18--8311Chr06:29553368..29553392 (25 bp)
GGCTTTTGAAATTGGCTTAGCTCAC
LOC_Os06g48830
OsAffx.28177.1.S1_at--644--3151Chr06:29553359..29553383 (25 bp)
AATTGGCTTAGCTCACTTATTAATA
LOC_Os06g48830
OsAffx.28177.1.S1_at--981--8291Chr06:29553355..29553379 (25 bp)
GGCTTAGCTCACTTATTAATAGATA
LOC_Os06g48830
OsAffx.28177.1.S1_at--565--2531Chr06:29553299..29553323 (25 bp)
AACTATGAGTAAAGTGCTACATCTT
LOC_Os06g48830
OsAffx.28177.1.S1_at--1017--9831Chr06:29553290..29553314 (25 bp)
TAAAGTGCTACATCTTAAATGGACC
LOC_Os06g48830
Target Sequence 
GGGCACAGAGCTCCTCATCATCATGACGAGACAGGGCATACCTGCCCTCATGCCGCCTGACATGAGCTCGGGGCGTGGGG
GGCTTGCCGCTATCCCATCCATTCATCACCCGGTCGCAGACCGGTCACAGGCTTTTGAAATTGGCTTAGCTCACTTATTA
ATAGATACTAATGCAAATGGATATAATATTGGGCTGAAAACTATGAGTAAAGTGCTACATCTTAAATGGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28177.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis