Browse Element(s) Details


OsAffx.19937.1.S1_at

Description tigr:9640.m03168
TID=OsAffx.19937.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3260011/11hypothetical protein
LOC_Os06g487901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32544Os.49130.1.S1_x_at11/1112+19614056..19621685expressed protein
LOC_Os12g32560OsAffx.19936.1.S1_at11/1112+19624136..19625193hypothetical protein
LOC_Os12g32580OsAffx.31985.1.S1_at11/1112+19628407..19631950expressed protein
LOC_Os12g32580Os.33256.1.S1_at1/1112+19628407..19631950expressed protein
LOC_Os12g32590Os.52293.1.S1_at11/1112+19634919..19639227NB-ARC domain containing protein, expressed
LOC_Os12g32600OsAffx.19937.1.S1_at11/1112+19643336..19645788hypothetical protein
LOC_Os12g32610OsAffx.31986.1.S1_at11/1112+19646824..19647784expressed protein
LOC_Os12g32620Os.7784.1.S1_at11/1112+19651676..19653551Pollen-specific protein SF3, putative, expressed
LOC_Os12g32630OsAffx.7769.1.S1_at10/1112+19656304..19659365F-box domain containing protein, expressed
LOC_Os12g32630Os.26764.1.A1_at9/1112+19656304..19659365F-box domain containing protein, expressed
LOC_Os12g32640Os.54777.1.S1_at11/1112+19666321..19669899Haemolysin-III related family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19937.1.S1_at--594--8111Chr12:19645115..19645139 (25 bp)
GGACTTATTATCTCCATTTCCTAAA
LOC_Os12g32600
OsAffx.19937.1.S1_at--1025--6058Chr11:23709071..23709093 (23 bp)
GAGTTACATTTTTAGTCCCCATCCT
NONE
OsAffx.19937.1.S1_at--1134--712Chr11:17950258..17950282 (25 bp)
ATTCCCTCCAAGTCTCACGAATTAA
NONE
OsAffx.19937.1.S1_at--799--5211Chr12:19644934..19644954 (21 bp)
GAATTAACAAGCCTCTCCCAGATTG
LOC_Os12g32600
OsAffx.19937.1.S1_at--143--4791Chr12:19644620..19644644 (25 bp)
GCTGCCAAGACATCATCGAACCAAG
LOC_Os12g32600
OsAffx.19937.1.S1_at--800--211Chr12:19644461..19644485 (25 bp)
ATTTGTGTTGACCTTGCGGCCCTTA
LOC_Os12g32600
OsAffx.19937.1.S1_at--106--8411Chr12:19644022..19644468 (25 bp)
GGCCCTTAGCATGCTGTTAACTGTA
LOC_Os12g32600
OsAffx.19937.1.S1_at--543--6331Chr12:19643964..19643988 (25 bp)
GATGCAGCTCAGTCATTTACATTGC
LOC_Os12g32600
OsAffx.19937.1.S1_at--333--7411Chr12:19643433..19643948 (25 bp)
GTGATATTGTCCAACTTGCGCGGGC
LOC_Os12g32600
OsAffx.19937.1.S1_at--4--10692Chr12:19643418..19643440 (23 bp)
TTGCGCGGGCCTGTAAAGAACGGCT
LOC_Os12g32600
OsAffx.19937.1.S1_at--600--4292Chr12:19643381..19643405 (25 bp)
CCTCGTGCCTGTAAAAAGCTGCTTT
LOC_Os12g32600
Target Sequence 
GGACTTATTATCTCCATTTCCTAAAGACGAAGGCGGGAAGAGAAATGGGAGTTTCAAGGAAGGAGTTGATGGTGGGATTG
GGGGAAGAGGAATAAGAGTTTCAAGGAGGGAGTTGATGGTGGGATTGGTTATGGGAGTTACATTTTTAGTCCCCATCCTC
ACATCGAATTCCCTCCAAGTCTCACGAATTAACAAGCCTCTCCCAGATTGGCTGCCAAGACATCATCGAACCAAGTTCCT
GAGTGGAAGATGTGATAAATTCTTCATTTGTGTTGACCTTGCGGCCCTTAGCATGCTGTTAACTGTAAACAAAAGCCTGA
TAGATCATGATTTCTGGGATGATGCAGCTCAGTCATTTACATTGCATTACACGTTATTCAGTGATATTGTCCAACTTGCG
CGGGCCTGTAAAGAACGGCTGCTATGCCGGCCCCTCGTGCCTGTAAAAAGCTGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19937.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis