Browse Element(s) Details


Os.26764.1.A1_at

Description gb:CB650219
DB_XREF= gi:29645212
DB_XREF=OSJNEb14I20.r
CLONE=OSJNEb14I20
TID=Os.26764.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.26764 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_566421.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g326309/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32580OsAffx.31985.1.S1_at11/1112+19628407..19631950expressed protein
LOC_Os12g32580Os.33256.1.S1_at1/1112+19628407..19631950expressed protein
LOC_Os12g32590Os.52293.1.S1_at11/1112+19634919..19639227NB-ARC domain containing protein, expressed
LOC_Os12g32600OsAffx.19937.1.S1_at11/1112+19643336..19645788hypothetical protein
LOC_Os12g32610OsAffx.31986.1.S1_at11/1112+19646824..19647784expressed protein
LOC_Os12g32620Os.7784.1.S1_at11/1112+19651676..19653551Pollen-specific protein SF3, putative, expressed
LOC_Os12g32630OsAffx.7769.1.S1_at10/1112+19656304..19659365F-box domain containing protein, expressed
LOC_Os12g32630Os.26764.1.A1_at9/1112+19656304..19659365F-box domain containing protein, expressed
LOC_Os12g32640Os.54777.1.S1_at11/1112+19666321..19669899Haemolysin-III related family protein, expressed
LOC_Os12g32650Os.7337.1.S2_at11/1112+19672493..19679518expressed protein
LOC_Os12g32650Os.7337.1.S3_at11/1112+19672493..19679518expressed protein
LOC_Os12g32650Os.7337.1.S1_at11/1112+19672493..19679518expressed protein
LOC_Os12g32660Os.7337.3.S1_x_at11/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32660Os.7337.2.S1_at10/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32660OsAffx.29362.1.S1_x_at1/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32660OsAffx.29362.1.S1_at1/1112+19675539..19681634NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26764.1.A1_at--81--6331Chr12:19656576..19656600 (25 bp)
GATGCTTTGCACTAAACTTGGGTCC
LOC_Os12g32630
Os.26764.1.A1_at--346--9831Chr12:19656564..19656588 (25 bp)
TAAACTTGGGTCCTCCTGGCTTGTA
LOC_Os12g32630
Os.26764.1.A1_at--596--4271Chr12:19656550..19656574 (25 bp)
CCTGGCTTGTAGTTGCTGCTGGGAA
LOC_Os12g32630
Os.26764.1.A1_at--681--4691Chr12:19656533..19656557 (25 bp)
GCTGGGAACCCTTTGTACAGTGTTG
LOC_Os12g32630
Os.26764.1.A1_at--498--291Chr12:19656494..19656518 (25 bp)
ATAGTTGGTGTGAGGCATGTCGCCT
LOC_Os12g32630
Os.26764.1.A1_at--1099--7231Chr12:19656476..19656500 (25 bp)
GTCGCCTCCGATTGTTGTAATTCTT
LOC_Os12g32630
Os.26764.1.A1_at--262--811NONE
ATGGGTCATTTGTGGCATGTACTTG
NONE
Os.26764.1.A1_at--863--731Chr12:19656417..19656441 (25 bp)
ATGTACTTGTTGCTAGAATACCCTA
LOC_Os12g32630
Os.26764.1.A1_at--55--5231Chr12:19656402..19656426 (25 bp)
GAATACCCTATATCGTTATACTTAA
LOC_Os12g32630
Os.26764.1.A1_at--15--331Chr12:19656385..19656409 (25 bp)
ATACTTAACGATATCATGGTCCCTT
LOC_Os12g32630
Os.26764.1.A1_at--881--811NONE
ATGGTCCCTTTTAGCATGTAATTGT
NONE
Target Sequence 
GATGCTTTGCACTAAACTTGGGTCCTCCTGGCTTGTAGTTGCTGCTGGGAACCCTTTGTACAGTGTTGTTAGGAAAAATT
TAATAGTTGGTGTGAGGCATGTCGCCTCCGATTGTTGTAATTCTTTCTGACAACAGACAAAATATGGGTCATTTGTGGCA
TGTACTTGTTGCTAGAATACCCTATATCGTTATACTTAACGATATCATGGTCCCTTTTAGCATGTAATTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26764.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis