Browse Element(s) Details


Os.7337.1.S3_at

Description gb:AK121419.1
DB_XREF= gi:37991042
TID=Os.7337.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7337 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023133J11, full insert sequence.
FL= gb:AK121419.1 gb:AK109892.1 gb:AK064077.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3265011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32610OsAffx.31986.1.S1_at11/1112+19646824..19647784expressed protein
LOC_Os12g32620Os.7784.1.S1_at11/1112+19651676..19653551Pollen-specific protein SF3, putative, expressed
LOC_Os12g32630OsAffx.7769.1.S1_at10/1112+19656304..19659365F-box domain containing protein, expressed
LOC_Os12g32630Os.26764.1.A1_at9/1112+19656304..19659365F-box domain containing protein, expressed
LOC_Os12g32640Os.54777.1.S1_at11/1112+19666321..19669899Haemolysin-III related family protein, expressed
LOC_Os12g32650Os.7337.1.S2_at11/1112+19672493..19679518expressed protein
LOC_Os12g32650Os.7337.1.S3_at11/1112+19672493..19679518expressed protein
LOC_Os12g32650Os.7337.1.S1_at11/1112+19672493..19679518expressed protein
LOC_Os12g32660Os.7337.3.S1_x_at11/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32660Os.7337.2.S1_at10/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32660OsAffx.29362.1.S1_x_at1/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32660OsAffx.29362.1.S1_at1/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32670Os.53078.1.S1_at11/1112+19687898..19690723NB-ARC domain containing protein, expressed
LOC_Os12g32680OsAffx.7770.1.S1_at11/1112+19701881..19705582NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7337.1.S3_at--964--991Chr12:19678922..19678946 (25 bp)
AGGTTTCTTAGGCTGAGTCGCTTAA
LOC_Os12g32650
Os.7337.1.S3_at--628--7371Chr12:19678978..19679002 (25 bp)
GTGACCATCATTTTTAGCTACCTCG
LOC_Os12g32650
Os.7337.1.S3_at--274--1571Chr12:19678993..19679017 (25 bp)
AGCTACCTCGAATTCTTGTAACTCC
LOC_Os12g32650
Os.7337.1.S3_at--564--1991Chr12:19679013..19679037 (25 bp)
ACTCCTGAAGTGTTGTTGGCATCCC
LOC_Os12g32650
Os.7337.1.S3_at--688--6611Chr12:19679027..19679051 (25 bp)
GTTGGCATCCCAGTTTTAAGTATCT
LOC_Os12g32650
Os.7337.1.S3_at--171--1431Chr12:19679088..19679112 (25 bp)
AGAAACGCATGTTCCGTATGCCATC
LOC_Os12g32650
Os.7337.1.S3_at--170--3231Chr12:19679113..19679137 (25 bp)
CAAGTCTGCTTGTTTACCTGTGAAA
LOC_Os12g32650
Os.7337.1.S3_at--688--351Chr12:19679327..19679351 (25 bp)
ATAAGTTCAGCCTCTTGATCAAGAC
LOC_Os12g32650
Os.7337.1.S3_at--237--2231Chr12:19679430..19679454 (25 bp)
ACAAGTGTACTGTTGTCCGCCTGAC
LOC_Os12g32650
Os.7337.1.S3_at--125--7251Chr12:19679444..19679468 (25 bp)
GTCCGCCTGACATCTTGAAAATTAT
LOC_Os12g32650
Os.7337.1.S3_at--259--171Chr12:19679464..19679488 (25 bp)
ATTATTGTCATCTACTCTTGCGCAT
LOC_Os12g32650
Target Sequence 
AGGTTTCTTAGGCTGAGTCGCTTAAGGTTTGTTAAAGTACTCAATGCACTCAACATGTGACCATCATTTTTAGCTACCTC
GAATTCTTGTAACTCCTGAAGTGTTGTTGGCATCCCAGTTTTAAGTATCTTTGATAACATACTGTCAGGAACATGAAGAC
AACGCAAGAAACGCATGTTCCGTATGCCATCCAAGTCTGCTTGTTTACCTGTGAAATATTTGAGCTTGAACACTTGCAGA
TGACAGAGTTTAAGGATACTTCGAATATGAGACTTATCACATGAAAACAGGAAGAGGTAACGGAGCTGTGTTAGACTGGG
NATTTCATCAANGTGCATTAGAGAGGGATGGCACATCCAAGTATAGCAGACGCAANCGTGCCGATTTACGAAGANCTTCT
CCAAGCATAAGTTCAGCCTCTTGATCAAGACAAAATNCACTTTGTATAATAAGAGTACGTAAATTTGTTATAGGGGGGAT
TGCTCTTAAAGAGCCACAATGTGCAATAGACAAGTGTACTGTTGTCCGCCTGACATCTTGAAAATTATTGTCATCTACTC
TTGCGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7337.1.S3_at     

Putative homologies in rice

Putative homologies in arabidopsis