Browse Element(s) Details


Os.54777.1.S1_at

Description gb:AK106737.1
DB_XREF= gi:32991946
TID=Os.54777.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54777 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-A11, full insert sequence.
FL= gb:AK106737.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3264011/11Haemolysin-III related family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32600OsAffx.19937.1.S1_at11/1112+19643336..19645788hypothetical protein
LOC_Os12g32610OsAffx.31986.1.S1_at11/1112+19646824..19647784expressed protein
LOC_Os12g32620Os.7784.1.S1_at11/1112+19651676..19653551Pollen-specific protein SF3, putative, expressed
LOC_Os12g32630OsAffx.7769.1.S1_at10/1112+19656304..19659365F-box domain containing protein, expressed
LOC_Os12g32630Os.26764.1.A1_at9/1112+19656304..19659365F-box domain containing protein, expressed
LOC_Os12g32640Os.54777.1.S1_at11/1112+19666321..19669899Haemolysin-III related family protein, expressed
LOC_Os12g32650Os.7337.1.S2_at11/1112+19672493..19679518expressed protein
LOC_Os12g32650Os.7337.1.S3_at11/1112+19672493..19679518expressed protein
LOC_Os12g32650Os.7337.1.S1_at11/1112+19672493..19679518expressed protein
LOC_Os12g32660Os.7337.3.S1_x_at11/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32660Os.7337.2.S1_at10/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32660OsAffx.29362.1.S1_x_at1/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32660OsAffx.29362.1.S1_at1/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32670Os.53078.1.S1_at11/1112+19687898..19690723NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54777.1.S1_at--695--9391Chr12:19669085..19669109 (25 bp)
TCGTCCACTATTCTTTCCTCTGCGA
LOC_Os12g32640
Os.54777.1.S1_at--344--4251Chr12:19669259..19669283 (25 bp)
CCGTCGCGCACAAGATGGTGCTCTA
LOC_Os12g32640
Os.54777.1.S1_at--764--9951Chr12:19669345..19669369 (25 bp)
TACGCGCTCGGCGTTGCCGTGTACG
LOC_Os12g32640
Os.54777.1.S1_at--60--3751Chr12:19669492..19669516 (25 bp)
CTCAAGTGGCGGGACGCTGTCAAAT
LOC_Os12g32640
Os.54777.1.S1_at--772--8471Chr12:19669498..19669522 (25 bp)
TGGCGGGACGCTGTCAAATGCTGAC
LOC_Os12g32640
Os.54777.1.S1_at--267--2291Chr12:19669513..19669537 (25 bp)
AAATGCTGACGTCATCTCGCCATGA
LOC_Os12g32640
Os.54777.1.S1_at--622--9611Chr12:19669524..19669548 (25 bp)
TCATCTCGCCATGACACCGAGAGTG
LOC_Os12g32640
Os.54777.1.S1_at--98--3371Chr12:19669538..19669562 (25 bp)
CACCGAGAGTGTGAAGTGGATTCAT
LOC_Os12g32640
Os.54777.1.S1_at--387--7351Chr12:19669548..19669572 (25 bp)
GTGAAGTGGATTCATTTTACCAAAG
LOC_Os12g32640
Os.54777.1.S1_at--508--5211Chr12:19669580..19669604 (25 bp)
GAATTTTAACTGAGCTCACTGGTGG
LOC_Os12g32640
Os.54777.1.S1_at--1010--2551Chr12:19669587..19669611 (25 bp)
AACTGAGCTCACTGGTGGTGGTTTG
LOC_Os12g32640
Target Sequence 
TCGTCCACTATTCTTTCCTCTGCGACCCCTGGCTCCGCCGCGCCTACACGGCCGCCATCGCCTGCGCCGGCGCCGCCACC
GTGACGGCATCGCTGGTGCCGGCGTTCCAGTCCCCCAGGCTGCGCCCGCTCCGCGCCGCGCTCTTCTCCGGGCTGGCCGC
GTCGGGCGTCGTCCCCGTCGCGCACAAGATGGTGCTCTACGGCGGCACGGTGCGGGAGGCGGCGACGTCGGCGCGGTGCG
AGGCCGCCATGGGCGCGCTCTACGCGCTCGGCGTTGCCGTGTACGCCGCGCGTGTGCCCGAGCGGTGGTTCCCCGGGCGG
TTCGACCTCGTCGGGCACAGCCACCAGCTGTTCCACCTCCTCGTCGTCGCCGGCGCCTACGCCCACTACCTCGGCGCCCT
CGAGTACCTCAAGTGGCGGGACGCTGTCAAATGCTGACGTCATCTCGCCATGACACCGAGAGTGTGAAGTGGATTCATTT
TACCAAAGAAAATGAGAATTTTAACTGAGCTCACTGGTGGTGGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54777.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis