Browse Element(s) Details


Os.7337.1.S2_at

Description gb:AK109892.1
DB_XREF= gi:32995101
TID=Os.7337.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7337 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-E06, full insert sequence.
FL= gb:AK121419.1 gb:AK109892.1 gb:AK064077.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3265011/11expressed protein
LOC_Os06g154701/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32610OsAffx.31986.1.S1_at11/1112+19646824..19647784expressed protein
LOC_Os12g32620Os.7784.1.S1_at11/1112+19651676..19653551Pollen-specific protein SF3, putative, expressed
LOC_Os12g32630OsAffx.7769.1.S1_at10/1112+19656304..19659365F-box domain containing protein, expressed
LOC_Os12g32630Os.26764.1.A1_at9/1112+19656304..19659365F-box domain containing protein, expressed
LOC_Os12g32640Os.54777.1.S1_at11/1112+19666321..19669899Haemolysin-III related family protein, expressed
LOC_Os12g32650Os.7337.1.S2_at11/1112+19672493..19679518expressed protein
LOC_Os12g32650Os.7337.1.S3_at11/1112+19672493..19679518expressed protein
LOC_Os12g32650Os.7337.1.S1_at11/1112+19672493..19679518expressed protein
LOC_Os12g32660Os.7337.3.S1_x_at11/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32660Os.7337.2.S1_at10/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32660OsAffx.29362.1.S1_x_at1/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32660OsAffx.29362.1.S1_at1/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32670Os.53078.1.S1_at11/1112+19687898..19690723NB-ARC domain containing protein, expressed
LOC_Os12g32680OsAffx.7770.1.S1_at11/1112+19701881..19705582NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7337.1.S2_at--164--10431Chr12:19675809..19675833 (25 bp)
TTAGGCACAGTAATCCCATCAGAGA
LOC_Os12g32650
Os.7337.1.S2_at--1014--391Chr12:19675826..19675850 (25 bp)
ATCAGAGATGTACCACCTACGTAAT
LOC_Os12g32650
Os.7337.1.S2_at--1008--5191Chr12:19675889..19675913 (25 bp)
GAATTCTTGTGCTTAAACTACTCAT
LOC_Os12g32650
Os.7337.1.S2_at--612--1251Chr12:19675962..19675986 (25 bp)
AGATTCCTGTGATCCAGTCTGCAGA
LOC_Os12g32650
Os.7337.1.S2_at--130--9991Chr12:19675991..19676015 (25 bp)
TAGCTGATTACCATCCAATCTCTTC
LOC_Os12g32650
Os.7337.1.S2_at--1137--851Chr12:19676016..19676040 (25 bp)
ATGGCTTCATACTGAACCTGCTGGT
LOC_Os12g32650
Os.7337.1.S2_at--1033--2371Chr12:19676065..19676089 (25 bp)
AAACTGCATGCTGTATCGTCTGGAG
LOC_Os12g32650
Os.7337.1.S2_at--170--7711Chr12:19676111..19676135 (25 bp)
GGGTCTGCATGCCAATCTAGCTATG
LOC_Os12g32650
Os.7337.1.S2_at--56--9711Chr12:19676170..19676194 (25 bp)
TCACACTTCACACATGGTCTATTGC
LOC_Os12g32650
Os.7337.1.S2_at--992--6352Chr12:19676280..19676304 (25 bp)
GATGCCTTTGCTTGTATATGTTTCG
LOC_Os12g32650
Os.7337.1.S2_at--973--731Chr12:19676297..19676321 (25 bp)
ATGTTTCGTGTTTGTCTTTTGCGTA
LOC_Os12g32650
Target Sequence 
TTAGGCACAGTAATCCCATCAGAGATGTACCACCTACGTAATAGATAAGAAAACTTATGTCAGGACTCATGAGTAAAGCA
GAATTCTTGTGCTTAAACTACTCATCAGCACATATATACATCATCAGTGAGTATGCTTCTGGCATCACACTCCAGATTCC
TGTGATCCAGTCTGCAGATGAATAGCTGATTACCATCCAATCTCTTCATGGCTTCATACTGAACCTGCTGGTGTGGTTAT
TAGTCACCACACTGCAAAACTGCATGCTGTATCGTCTGGAGTTTGGACCCTCCCTGGAATCCGGGTCTGCATGCCAATCT
AGCTATGATCAGTTCGAATTCAACAAATCAACAATCACAATTCACACTTCACACATGGTCTATTGCTGAAAAAAAAAAAT
CAAACATGGCCAAAAAGAAAAAACTGGATGCTTTGGGATGGAACCATTCTAGTGGACTAGGTGCAAAGGAGTGATGCCTT
TGCTTGTATATGTTTCGTGTTTGTCTTTTGCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7337.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis