Browse Element(s) Details


OsAffx.29362.1.S1_x_at

Description tigr:9636.m01012
TID=OsAffx.29362.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2689010/11hypothetical protein
LOC_Os08g1052010/11hypothetical protein
LOC_Os08g2599010/11alcohol oxidase, putative
LOC_Os12g326601/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26880Os.53880.1.S1_at11/118+16239848..16241437bZIP transcription factor family protein, expressed
LOC_Os08g26890OsAffx.29362.2.S1_s_at11/118+16255970..16257123hypothetical protein
LOC_Os08g26890OsAffx.29362.1.S1_x_at10/118+16255970..16257123hypothetical protein
LOC_Os08g26890OsAffx.29362.1.S1_at10/118+16255970..16257123hypothetical protein
LOC_Os08g26890OsAffx.29362.2.S1_x_at4/118+16255970..16257123hypothetical protein
LOC_Os08g26900Os.26886.3.S1_x_at5/118+16271402..16277301retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g26900Os.45173.5.S1_x_at4/118+16271402..16277301retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g26900Os.45173.3.S1_x_at1/118+16271402..16277301retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g26900Os.45173.1.S1_x_at1/118+16271402..16277301retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g26900Os.47999.2.A1_x_at1/118+16271402..16277301retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g26900OsAffx.20877.1.S1_x_at1/118+16271402..16277301retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g26910NANA8+16277566..16281774retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006952biological_processdefense response
GO:0009055molecular_functionelectron carrier activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29362.1.S1_x_at--770--8073Chr08:6171592..6171616 (25 bp)
GGAGCAGCTGTATGTGTGCAATGAC
LOC_Os08g10520
OsAffx.29362.1.S1_x_at--571--8674Chr08:16370679..16370703 (25 bp)
TGTGTGCAATGACAGCGTGCTGCCC
NONE
OsAffx.29362.1.S1_x_at--1049--5711NONE
GACTCCCTGTCCGATAAATATAAAA
NONE
OsAffx.29362.1.S1_x_at--516--10194Chr08:6172285..6172309 (25 bp)
TATATTTTTATCAACGTATTCACAA
LOC_Os08g10520
OsAffx.29362.1.S1_x_at--1023--6799Chr12:13652083..13652103 (21 bp)
GTTTTGCCCCCATCGACATTAATGG
NONE
OsAffx.29362.1.S1_x_at--3--10514Chr08:16371617..16371641 (25 bp)
TTAATGGGAACACCATCAGCATGGG
NONE
OsAffx.29362.1.S1_x_at--116--8454Chr08:16371642..16371666 (25 bp)
GGCCAAATTAGCTTGTGACTACATG
NONE
OsAffx.29362.1.S1_x_at--733--10014Chr08:16371650..16371674 (25 bp)
TAGCTTGTGACTACATGTGTGATAG
NONE
OsAffx.29362.1.S1_x_at--115--8454Chr08:16371676..16371700 (25 bp)
GGCCAAATTAGCTTGGGAGTACAGG
NONE
OsAffx.29362.1.S1_x_at--592--7654Chr08:16371690..16371714 (25 bp)
GGGAGTACAGGTGTATATCACAGAT
NONE
OsAffx.29362.1.S1_x_at--824--7434Chr08:16371700..16371724 (25 bp)
GTGTATATCACAGATGACCGAGCTA
NONE
Target Sequence 
GGAGCAGCTGTATGTGTGCAATGACAGCGTGCTGCCCACCGCAGTGGGCATCAACCCCATGATCACCNTACAGTCCGTGG
CGTATTGCGTTGCCAANGGCATTGCTGACTCCCTGTCCGATAAATATAAAAAATATGAAAAAATAANCATATATATTTTT
ATCAACGTATTCACAATAATTAAATTAGATCAACAACGTTTTGCCCCCATCGACATTAATGGGAACACCATCAGCATGGG
GGCCAAATTAGCTTGTGACTACATGTGTGATAGGGGCCAAATTAGCTTGGGAGTACAGGTGTATATCACAGATGACCGAG
CTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29362.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis