Browse Element(s) Details


OsAffx.29362.2.S1_x_at

Description tigr:9636.m02555
TID=OsAffx.29362.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g259908/11alcohol oxidase, putative
LOC_Os08g268904/11hypothetical protein
LOC_Os08g105202/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25960NANA8+15658138..15662567transposon protein, putative, Mutator sub-class
LOC_Os08g25970OsAffx.20387.1.S1_x_at1/118+15667757..15673982retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g25970OsAffx.8166.1.S1_at1/118+15667757..15673982retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g25980OsAffx.22004.2.S1_at11/118+15674473..15677490hypothetical protein
LOC_Os08g25980OsAffx.5752.1.S1_x_at1/118+15674473..15677490hypothetical protein
LOC_Os08g25980OsAffx.22004.1.S1_at1/118+15674473..15677490hypothetical protein
LOC_Os08g25990OsAffx.29362.2.S1_s_at11/118+15681980..15684667alcohol oxidase, putative
LOC_Os08g25990OsAffx.29362.1.S1_at10/118+15681980..15684667alcohol oxidase, putative
LOC_Os08g25990OsAffx.29362.1.S1_x_at10/118+15681980..15684667alcohol oxidase, putative
LOC_Os08g25990OsAffx.29362.2.S1_x_at8/118+15681980..15684667alcohol oxidase, putative
LOC_Os08g25999NANA8+15686857..15687751NA
LOC_Os08g26010NANA8+15690995..15695093transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g26020OsAffx.25936.1.S1_s_at9/118+15695986..15699024transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g26020OsAffx.25936.7.S1_s_at8/118+15695986..15699024transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g26020OsAffx.25936.2.S1_x_at6/118+15695986..15699024transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g26020OsAffx.25936.5.S1_x_at2/118+15695986..15699024transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g26030NANA8+15705459..15705686hypothetical protein
LOC_Os08g26040NANA8+15707523..15708224hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009055molecular_functionelectron carrier activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29362.2.S1_x_at--824--1731Chr08:15684604..15684628 (25 bp)
ACCATCGACGCCCATGGCGAGAGCT
LOC_Os08g25990
OsAffx.29362.2.S1_x_at--772--8073Chr08:6171592..6171616 (25 bp)
GGAGCAGCTGTATGTGTGCAATGAC
LOC_Os08g10520
OsAffx.29362.2.S1_x_at--572--8674Chr08:16370679..16370703 (25 bp)
TGTGTGCAATGACAGCGTGCTGCCC
NONE
OsAffx.29362.2.S1_x_at--550--8374Chr08:16370746..16370769 (24 bp)
GGCGTATTGCGTTGCCAATGGCATT
NONE
OsAffx.29362.2.S1_x_at--386--10694Chr08:16370756..16370780 (25 bp)
TTGCCAATGGCATTGCTGACTCCCT
NONE
OsAffx.29362.2.S1_x_at--784--3851NONE
CTGACTCCCTGTCCGGATCATCGAA
NONE
OsAffx.29362.2.S1_x_at--924--1971NONE
ACTCCCTGTCCGGATCATCGAAAAG
NONE
OsAffx.29362.2.S1_x_at--509--3791NONE
CTCCCTGTCCGGATCATCGAAAAGC
NONE
OsAffx.29362.2.S1_x_at--280--5051Chr08:15682079..15682103 (25 bp)
GCAGCAATCTTCTGATTACAAGTCG
LOC_Os08g25990
OsAffx.29362.2.S1_x_at--870--2211Chr08:15682062..15682086 (25 bp)
ACAAGTCGAAGACTGCAGATCAGTA
LOC_Os08g25990
OsAffx.29362.2.S1_x_at--616--5032Chr08:15926433..15926457 (25 bp)
GCAGTAGCAAAAGCCAGCAGCTGGG
NONE
Target Sequence 
ACCATCGACGCCCATGGCGAGAGCTGGGAGGCGGAGCAGCTGTATGTGTGCAATGACAGCGTGCTGCCCACCGCAGTGGG
CATCAACCCCATGATCACCGTACAGTCCGTGGCGTATTGCGTTGCCAATGGCATTGCTGACTCCCTGTCCGGATCATCGA
AAAGCACGACAGGAAGGGTGCCTGCGCAGCAATCTTCTGATTACAAGTCGAAGACTGCAGATCAGTACTACTATAACAGC
ATAAGCAGTAGCAAAAGCCAGCAGCTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29362.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis