Browse Element(s) Details


OsAffx.29362.2.S1_s_at

Description tigr:9636.m02555
TID=OsAffx.29362.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1052011/11hypothetical protein
LOC_Os08g2599011/11alcohol oxidase, putative
LOC_Os08g2689011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10470Os.7442.2.S1_s_at11/118+6148820..6151471SET domain-containing protein, putative, expressed
LOC_Os08g10480OsAffx.29135.1.S1_at10/118+6152778..6155041copper chaperone, putative, expressed
LOC_Os08g10490OsAffx.5778.1.S1_at11/118+6155655..6156859heavy metal-associated domain containing protein
LOC_Os08g10500Os.11331.1.S1_at11/118+6162010..6162949expressed protein
LOC_Os08g10510Os.19524.1.S1_at11/118+6163763..6169452aminotransferase, class III family protein, expressed
LOC_Os08g10510Os.46436.1.S1_at1/118+6163763..6169452aminotransferase, class III family protein, expressed
LOC_Os08g10510OsAffx.26573.1.S1_x_at1/118+6163763..6169452aminotransferase, class III family protein, expressed
LOC_Os08g10520OsAffx.29362.2.S1_s_at11/118+6171521..6172675hypothetical protein
LOC_Os08g10520OsAffx.29362.1.S1_at10/118+6171521..6172675hypothetical protein
LOC_Os08g10520OsAffx.29362.1.S1_x_at10/118+6171521..6172675hypothetical protein
LOC_Os08g10520OsAffx.29362.2.S1_x_at2/118+6171521..6172675hypothetical protein
LOC_Os08g10530OsAffx.5779.1.S1_at11/118+6174816..6175415hypothetical protein
LOC_Os08g10540OsAffx.29113.1.S1_at4/118+6183423..6187844retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009055molecular_functionelectron carrier activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29362.2.S1_s_at--815--3953Chr08:6171591..6171615 (25 bp)
CGGAGCAGCTGTATGTGTGCAATGA
LOC_Os08g10520
OsAffx.29362.2.S1_s_at--771--8073Chr08:6171592..6171616 (25 bp)
GGAGCAGCTGTATGTGTGCAATGAC
LOC_Os08g10520
OsAffx.29362.2.S1_s_at--522--5933Chr08:6171593..6171617 (25 bp)
GAGCAGCTGTATGTGTGCAATGACA
LOC_Os08g10520
OsAffx.29362.2.S1_s_at--112--1513Chr08:6171594..6171618 (25 bp)
AGCAGCTGTATGTGTGCAATGACAG
LOC_Os08g10520
OsAffx.29362.2.S1_s_at--649--3874Chr08:16370674..16370698 (25 bp)
CTGTATGTGTGCAATGACAGCGTGC
NONE
OsAffx.29362.2.S1_s_at--237--8774Chr08:16370675..16370699 (25 bp)
TGTATGTGTGCAATGACAGCGTGCT
NONE
OsAffx.29362.2.S1_s_at--274--6934Chr08:16370676..16370700 (25 bp)
GTATGTGTGCAATGACAGCGTGCTG
NONE
OsAffx.29362.2.S1_s_at--896--10114Chr08:16370677..16370701 (25 bp)
TATGTGTGCAATGACAGCGTGCTGC
NONE
OsAffx.29362.2.S1_s_at--576--794Chr08:16370678..16370702 (25 bp)
ATGTGTGCAATGACAGCGTGCTGCC
NONE
OsAffx.29362.2.S1_s_at--570--8674Chr08:16370679..16370703 (25 bp)
TGTGTGCAATGACAGCGTGCTGCCC
NONE
OsAffx.29362.2.S1_s_at--128--8694Chr08:16370681..16370705 (25 bp)
TGTGCAATGACAGCGTGCTGCCCAC
NONE
Target Sequence 
CGGAGCAGCTGTATGTGTGCAATGACAGCGTGCTGCCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29362.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis