Browse Element(s) Details


Os.7442.2.S1_s_at

Description gb:AK063775.1
DB_XREF= gi:32973793
TID=Os.7442.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7442 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033149M20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-D01, full insert sequence.
FL= gb:AK103876.1 gb:AK063775.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1047011/11SET domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10430Os.49897.1.S1_at11/118+6121076..6125048NB-ARC domain containing protein, expressed
LOC_Os08g10440OsAffx.29134.1.S1_at11/118+6131714..6135162NB-ARC domain containing protein, expressed
LOC_Os08g10440Os.23329.1.S1_s_at11/118+6131714..6135162NB-ARC domain containing protein, expressed
LOC_Os08g10450Os.5801.1.S1_at11/118+6135784..6138033equilibratiave nucleoside transporter 1, putative, expressed
LOC_Os08g10460NANA8+6139415..6144842retrotransposon protein, putative, unclassified
LOC_Os08g10470Os.7442.2.S1_s_at11/118+6148820..6151471SET domain-containing protein, putative, expressed
LOC_Os08g10480OsAffx.29135.1.S1_at10/118+6152778..6155041copper chaperone, putative, expressed
LOC_Os08g10490OsAffx.5778.1.S1_at11/118+6155655..6156859heavy metal-associated domain containing protein
LOC_Os08g10500Os.11331.1.S1_at11/118+6162010..6162949expressed protein
LOC_Os08g10510Os.19524.1.S1_at11/118+6163763..6169452aminotransferase, class III family protein, expressed
LOC_Os08g10510Os.46436.1.S1_at1/118+6163763..6169452aminotransferase, class III family protein, expressed
LOC_Os08g10510OsAffx.26573.1.S1_x_at1/118+6163763..6169452aminotransferase, class III family protein, expressed
LOC_Os08g10520OsAffx.29362.2.S1_s_at11/118+6171521..6172675hypothetical protein
LOC_Os08g10520OsAffx.29362.1.S1_at10/118+6171521..6172675hypothetical protein
LOC_Os08g10520OsAffx.29362.1.S1_x_at10/118+6171521..6172675hypothetical protein
LOC_Os08g10520OsAffx.29362.2.S1_x_at2/118+6171521..6172675hypothetical protein
LOC_Os08g10530OsAffx.5779.1.S1_at11/118+6174816..6175415hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7442.2.S1_s_at--240--9311Chr08:6149959..6149983 (25 bp)
TCCCATGTGTTTGAGTGCAATGTCT
LOC_Os08g10470
Os.7442.2.S1_s_at--172--1131Chr08:6149972..6149996 (25 bp)
AGTGCAATGTCTGTGGGAACCTGAA
LOC_Os08g10470
Os.7442.2.S1_s_at--168--2251Chr08:6150008..6150032 (25 bp)
AAATTGATGCTCCTGATGGTGGTGA
LOC_Os08g10470
Os.7442.2.S1_s_at--1162--6291Chr08:6150052..6150076 (25 bp)
GATGAGCTAAGCATAACCGATCTGC
LOC_Os08g10470
Os.7442.2.S1_s_at--445--351Chr08:6150064..6150088 (25 bp)
ATAACCGATCTGCTTGCTGCTTCTT
LOC_Os08g10470
Os.7442.2.S1_s_at--1039--10711Chr08:6150077..6150096 (20 bp)
TTGCTGCTTCTTTTGGTGGGAGCTC
LOC_Os08g10470
Os.7442.2.S1_s_at--781--1171Chr08:6151086..6151110 (25 bp)
AGTACTTCTGTAAACTGGTTGGAGT
LOC_Os08g10470
Os.7442.2.S1_s_at--146--651Chr08:6151319..6151343 (25 bp)
ATGCAGTCAGAAGCTGATCTCCTGT
LOC_Os08g10470
Os.7442.2.S1_s_at--268--4751Chr08:6151331..6151355 (25 bp)
GCTGATCTCCTGTGATACTTGAAAC
LOC_Os08g10470
Os.7442.2.S1_s_at--291--2051Chr08:6151347..6151371 (25 bp)
ACTTGAAACATTCCGTTTTGTCATG
LOC_Os08g10470
Os.7442.2.S1_s_at--813--8491Chr08:6151392..6151416 (25 bp)
TGGCATTGCATCTCTTGTCTACTGA
LOC_Os08g10470
Target Sequence 
TCCCATGTGTTTGAGTGCAATGTCTGTGGGAACCTGAAGAACGAAGATGAAATTGATGCTCCTGATGGTGGTGATTCCAG
CATGGCGGATTAGGATGAGCTAAGCATAACCGATCTGCTTGCTGCTTCTTTTGGTGGGAGCTCATAACACTTTGGTGGTA
GGACTTGGGAGTACTTCTGTAAACTGGTTGGAGTTTTGACAAAAACGGGAGTTTAATACACCTAAATATGGAGAGATGTA
TGAACAGAACAACATTCATTGACTGAATGTGGAACTAGCAATCCTTCTTGTACTCAGCAACGTATATATGAATGTGTATC
CGTTGTAGGGAGTCCTGCTTGTTCTGTACAATTTCTAATGCTCCCCCTTTATCTAGAATGGTGATTTAGACTTGAGAAAT
TTATGCAGTCAGAAGCTGATCTCCTGTGATACTTGAAACATTCCGTTTTGTCATGTCATGGTGTAGTTGATTGTATGGCA
TTGCATCTCTTGTCTACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7442.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis