Browse Element(s) Details


OsAffx.29134.1.S1_at

Description tigr:9636.m01004
TID=OsAffx.29134.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1044011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10410Os.6198.1.S1_at11/118+6106033..6109271expressed protein
LOC_Os08g10420OsAffx.5777.1.S1_at11/118+6115476..6117299Transferase family protein, expressed
LOC_Os08g10430Os.49897.1.S1_at11/118+6121076..6125048NB-ARC domain containing protein, expressed
LOC_Os08g10440OsAffx.29134.1.S1_at11/118+6131714..6135162NB-ARC domain containing protein, expressed
LOC_Os08g10440Os.23329.1.S1_s_at11/118+6131714..6135162NB-ARC domain containing protein, expressed
LOC_Os08g10450Os.5801.1.S1_at11/118+6135784..6138033equilibratiave nucleoside transporter 1, putative, expressed
LOC_Os08g10460NANA8+6139415..6144842retrotransposon protein, putative, unclassified
LOC_Os08g10470Os.7442.2.S1_s_at11/118+6148820..6151471SET domain-containing protein, putative, expressed
LOC_Os08g10480OsAffx.29135.1.S1_at10/118+6152778..6155041copper chaperone, putative, expressed
LOC_Os08g10490OsAffx.5778.1.S1_at11/118+6155655..6156859heavy metal-associated domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29134.1.S1_at--220--791Chr08:6134591..6134615 (25 bp)
ATGTGTCAGAGGCTAGCACCGATGA
LOC_Os08g10440
OsAffx.29134.1.S1_at--454--3791Chr08:6134644..6134668 (25 bp)
CTCGTCTTCCTCGATTTGAATCTGA
LOC_Os08g10440
OsAffx.29134.1.S1_at--755--5951Chr08:6134676..6134700 (25 bp)
GAGCAAGGGCACCATCATGTTCGGA
LOC_Os08g10440
OsAffx.29134.1.S1_at--698--4351Chr08:6134719..6134743 (25 bp)
CCAGCTCTGGAGGATCTCTTGTTGA
LOC_Os08g10440
OsAffx.29134.1.S1_at--116--8831Chr08:6134748..6134772 (25 bp)
TGTTGGCGATGTTGCCTCACATTCA
LOC_Os08g10440
OsAffx.29134.1.S1_at--1156--1231Chr08:6134840..6134864 (25 bp)
AGTTGGGCATCGATACAGCACCTGT
LOC_Os08g10440
OsAffx.29134.1.S1_at--988--1571Chr08:6134891..6134915 (25 bp)
AGCTCATCTTTGTCGACATCTACGT
LOC_Os08g10440
OsAffx.29134.1.S1_at--772--10391Chr08:6134937..6134961 (25 bp)
TTTTCCTCGGGACGCTGTTGAGCAT
LOC_Os08g10440
OsAffx.29134.1.S1_at--129--8911Chr08:6134955..6134979 (25 bp)
TGAGCATGTGTTCAGGCAAGCCGCA
LOC_Os08g10440
OsAffx.29134.1.S1_at--884--6591Chr08:6135026..6135050 (25 bp)
GATTGATCCTGTGTCTGAATTCTGA
LOC_Os08g10440
OsAffx.29134.1.S1_at--815--9631Chr08:6135092..6135116 (25 bp)
TCAGTGGTTTCTCCTGTTTGTGGTA
LOC_Os08g10440
Target Sequence 
ATGTGTCAGAGGCTAGCACCGATGAGGTTAGTATTCTTGGAGAGCTGCCCTCCCTCGTCTTCCTCGATTTGAATCTGAGG
CTGAAGAGCAAGGGCACCATCATGTTCGGAGGTGGTGAGGGGTCATTCCCAGCTCTGGAGGATCTCTTGTTGAGGTGTGT
TGGCGATGTTGCCTCACATTCACGGCTGTGCTTCCTGGCGGGTGTAATGCCCAAGCTCCAGAGGCTCGTGCTGCGGTTCT
GGATTTGTGAGTTGGGCATCGATACAGCACCTGTTGGCATGGAGCACCTCTCGAGCCTCCAGCTCATCTTTGTCGACATC
TACGTCCTGCAGGAGAAGATAAACGTTTTTCCTCGGGACGCTGTTGAGCATGTGTTCAGGCAAGCCGCACAAGCGCACCC
CAACCAGCCTGCCTTCGAATTCCATTGCTCGGGGTGATTGATCCTGTGTCTGAATTCTGATCCTATGTGTGTATGTAACA
AGTCGTGGAAACAGCAACAGCTCAGTGGTTTCTCCTGTTTGTGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29134.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis