Browse Element(s) Details


Os.23329.1.S1_s_at

Description gb:CB096511
DB_XREF= gi:27920703
DB_XREF=AF53-Rpf_05_A21_T7_081.ab1
CLONE=C0001557
TID=Os.23329.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.23329 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_190257.1 (A.thaliana) disease resistance protein RPP8-like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1044011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10410Os.6198.1.S1_at11/118+6106033..6109271expressed protein
LOC_Os08g10420OsAffx.5777.1.S1_at11/118+6115476..6117299Transferase family protein, expressed
LOC_Os08g10430Os.49897.1.S1_at11/118+6121076..6125048NB-ARC domain containing protein, expressed
LOC_Os08g10440OsAffx.29134.1.S1_at11/118+6131714..6135162NB-ARC domain containing protein, expressed
LOC_Os08g10440Os.23329.1.S1_s_at11/118+6131714..6135162NB-ARC domain containing protein, expressed
LOC_Os08g10450Os.5801.1.S1_at11/118+6135784..6138033equilibratiave nucleoside transporter 1, putative, expressed
LOC_Os08g10460NANA8+6139415..6144842retrotransposon protein, putative, unclassified
LOC_Os08g10470Os.7442.2.S1_s_at11/118+6148820..6151471SET domain-containing protein, putative, expressed
LOC_Os08g10480OsAffx.29135.1.S1_at10/118+6152778..6155041copper chaperone, putative, expressed
LOC_Os08g10490OsAffx.5778.1.S1_at11/118+6155655..6156859heavy metal-associated domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23329.1.S1_s_at--464--10171Chr08:6133755..6133779 (25 bp)
TATCAGTGTTGCTTACAGTGGTGAA
LOC_Os08g10440
Os.23329.1.S1_s_at--136--1111Chr08:6133771..6133795 (25 bp)
AGTGGTGAAGACTACCTGTCCATCG
LOC_Os08g10440
Os.23329.1.S1_s_at--99--1771Chr08:6133784..6133808 (25 bp)
ACCTGTCCATCGCTAGGCAGCATGG
LOC_Os08g10440
Os.23329.1.S1_s_at--476--1471Chr08:6133881..6133905 (25 bp)
AGAAGGCAAAGCAACTCCTGCTCAC
LOC_Os08g10440
Os.23329.1.S1_s_at--23--2551Chr08:6133893..6133917 (25 bp)
AACTCCTGCTCACTTGGCTCAAGTT
LOC_Os08g10440
Os.23329.1.S1_s_at--668--8311Chr08:6133908..6133932 (25 bp)
GGCTCAAGTTCGATCAATTTCACTG
LOC_Os08g10440
Os.23329.1.S1_s_at--743--2771Chr08:6133939..6133963 (25 bp)
AAGAGTACAAGTGGTCTCCCATTAT
LOC_Os08g10440
Os.23329.1.S1_s_at--15--7151Chr08:6133952..6133976 (25 bp)
GTCTCCCATTATTGTTGCGGTTTAA
LOC_Os08g10440
Os.23329.1.S1_s_at--538--251Chr08:6133977..6134001 (25 bp)
ATATCTCCGAGTGCTGCATATCATG
LOC_Os08g10440
Os.23329.1.S1_s_at--484--251Chr08:6133994..6134018 (25 bp)
ATATCATGTTGGGTCACGGCTGCGA
LOC_Os08g10440
Os.23329.1.S1_s_at--181--5831Chr08:6134026..6134050 (25 bp)
GACCTCACTGCCGTTAGCAAATTAC
LOC_Os08g10440
Target Sequence 
TATCAGTGTTGCTTACAGTGGTGAAGACTACCTGTCCATCGCTAGGCAGCATGGGNACAGCTGCAATAAGGTTCGCCGGT
TGTCCCTGCAGTCCAACGCTGCAAAATCAGATTGCACAGTGTTAATAGAAGGCAAAGCAACTCCTGCTCACTTGGCTCAA
GTTCGATCAATTTCACTGTTTGGAAAGAGTACAAGTGGTCTCCCATTATTGTTGCGGTTTAAATATCTCCGAGTGCTGCA
TATCATGTTGGGTCACGGCTGCGAGCGAGCTGACCTCACTGCCGTTAGCAAATTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23329.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis