Browse Element(s) Details


Os.5801.1.S1_at

Description gb:AK059439.1
DB_XREF= gi:32969457
TID=Os.5801.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5801 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-027-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-027-H02, full insert sequence.
FL= gb:AK059439.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1045011/11equilibratiave nucleoside transporter 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10420OsAffx.5777.1.S1_at11/118+6115476..6117299Transferase family protein, expressed
LOC_Os08g10430Os.49897.1.S1_at11/118+6121076..6125048NB-ARC domain containing protein, expressed
LOC_Os08g10440OsAffx.29134.1.S1_at11/118+6131714..6135162NB-ARC domain containing protein, expressed
LOC_Os08g10440Os.23329.1.S1_s_at11/118+6131714..6135162NB-ARC domain containing protein, expressed
LOC_Os08g10450Os.5801.1.S1_at11/118+6135784..6138033equilibratiave nucleoside transporter 1, putative, expressed
LOC_Os08g10460NANA8+6139415..6144842retrotransposon protein, putative, unclassified
LOC_Os08g10470Os.7442.2.S1_s_at11/118+6148820..6151471SET domain-containing protein, putative, expressed
LOC_Os08g10480OsAffx.29135.1.S1_at10/118+6152778..6155041copper chaperone, putative, expressed
LOC_Os08g10490OsAffx.5778.1.S1_at11/118+6155655..6156859heavy metal-associated domain containing protein
LOC_Os08g10500Os.11331.1.S1_at11/118+6162010..6162949expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005337molecular_functionnucleoside transporter activity
GO:0010174molecular_functionnucleoside transporter activity, against a concentration gradient
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5801.1.S1_at--179--1991Chr08:6136342..6136366 (25 bp)
ACTGCCTACAATGTGTTCGATCTTG
LOC_Os08g10450
Os.5801.1.S1_at--152--6431Chr08:6136324..6136348 (25 bp)
GATCTTGTTGGCAAATCACTTCCTG
LOC_Os08g10450
Os.5801.1.S1_at--432--7951Chr08:6136144..6136168 (25 bp)
GGATACCTGACCTGCATCCTCATGA
LOC_Os08g10450
Os.5801.1.S1_at--427--7951Chr08:6136074..6136098 (25 bp)
GGATAGTCATAGTGCTGTTCCTTGT
LOC_Os08g10450
Os.5801.1.S1_at--518--6671Chr08:6136024..6136048 (25 bp)
GTTGCTTGGTTTTGGGTCATTTGAT
LOC_Os08g10450
Os.5801.1.S1_at--1099--3571Chr08:6136007..6136031 (25 bp)
CATTTGATAGTCCTAGTCCTGCCAT
LOC_Os08g10450
Os.5801.1.S1_at--1037--9171Chr08:6135988..6136012 (25 bp)
TGCCATCCTGTGTATCCATGTCAGT
LOC_Os08g10450
Os.5801.1.S1_at--501--3531Chr08:6135951..6135975 (25 bp)
CATGCTCAAGCTCACTCTTTATTTG
LOC_Os08g10450
Os.5801.1.S1_at--654--7051Chr08:6135889..6135913 (25 bp)
GTAATTTGTTAGTGTCGCCTAGACA
LOC_Os08g10450
Os.5801.1.S1_at--687--1951Chr08:6135860..6135884 (25 bp)
ACTGGTGCTAATGTCTGTAATTTGC
LOC_Os08g10450
Os.5801.1.S1_at--367--9191Chr08:6135829..6135853 (25 bp)
TGCCATCCTCTGTCCATAGTAACAT
LOC_Os08g10450
Target Sequence 
ACTGCCTACAATGTGTTCGATCTTGTTGGCAAATCACTTCCTGCCTTCTACTTCCTCNNGANNNCNAATATCGCTGTCGC
TGGNTCNTTTNGCNNGGCTCCNTGTTTTNACCCTCTCTTCTACGGTTGCCTCCNATGGACCCAGNTTCTTCCGCACCGAG
ATCCCAGTGACCATCCNTGACATGTCTTCTTGGANTCACCAANTGGATACCTGACCTGCATCCTCATGACCCTCGCGCCC
AAGGCTGTGCCAATCCAACACTCNGAGACAGCCGGGATAGTCATAGTGCTGTTCCTTGTNGCTGGCCTGGTCGTTGGTTC
ATTTGTTGCTTGGTTTTGGGTCATTTGATAGTCCTAGTCCTGCCATCCTGTGTATCCATGTCAGTGTATCATAGTGCCAT
GCTCAAGCTCACTCTTTATTTGTTATTTGCTCATTTACNCACCAAACGGCCAAGGGTATGTAATTTGTTAGTGTCGCCTA
GACAAAATACTGGTGCTAATGTCTGTAATTTGCTATTNNNNNAATGCCATCCTCTGTCCATAGTAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5801.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis