Browse Element(s) Details


Os.11331.1.S1_at

Description gb:AK062655.1
DB_XREF= gi:32972673
TID=Os.11331.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11331 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-E11, full insert sequence.
FL= gb:AK062655.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1050011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10450Os.5801.1.S1_at11/118+6135784..6138033equilibratiave nucleoside transporter 1, putative, expressed
LOC_Os08g10460NANA8+6139415..6144842retrotransposon protein, putative, unclassified
LOC_Os08g10470Os.7442.2.S1_s_at11/118+6148820..6151471SET domain-containing protein, putative, expressed
LOC_Os08g10480OsAffx.29135.1.S1_at10/118+6152778..6155041copper chaperone, putative, expressed
LOC_Os08g10490OsAffx.5778.1.S1_at11/118+6155655..6156859heavy metal-associated domain containing protein
LOC_Os08g10500Os.11331.1.S1_at11/118+6162010..6162949expressed protein
LOC_Os08g10510Os.19524.1.S1_at11/118+6163763..6169452aminotransferase, class III family protein, expressed
LOC_Os08g10510Os.46436.1.S1_at1/118+6163763..6169452aminotransferase, class III family protein, expressed
LOC_Os08g10510OsAffx.26573.1.S1_x_at1/118+6163763..6169452aminotransferase, class III family protein, expressed
LOC_Os08g10520OsAffx.29362.2.S1_s_at11/118+6171521..6172675hypothetical protein
LOC_Os08g10520OsAffx.29362.1.S1_at10/118+6171521..6172675hypothetical protein
LOC_Os08g10520OsAffx.29362.1.S1_x_at10/118+6171521..6172675hypothetical protein
LOC_Os08g10520OsAffx.29362.2.S1_x_at2/118+6171521..6172675hypothetical protein
LOC_Os08g10530OsAffx.5779.1.S1_at11/118+6174816..6175415hypothetical protein
LOC_Os08g10540OsAffx.29113.1.S1_at4/118+6183423..6187844retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11331.1.S1_at--187--951Chr08:6162407..6162431 (25 bp)
AGGACGGCCCGCAGGAGCAGTACCC
LOC_Os08g10500
Os.11331.1.S1_at--550--3332Chr08:6162487..6162511 (25 bp)
CACGGCGACGGATTCTGGAAAGGAT
LOC_Os08g10500
Os.11331.1.S1_at--884--8591Chr08:6162511..6162535 (25 bp)
TGGTCAGTTCCATCAGCTAGCTTCT
LOC_Os08g10500
Os.11331.1.S1_at--585--1571Chr08:6162525..6162549 (25 bp)
AGCTAGCTTCTCTCCTCATTTCTTT
LOC_Os08g10500
Os.11331.1.S1_at--959--131Chr08:6162588..6162612 (25 bp)
ATTAACTGTGTGATCTCCTGCTGAC
LOC_Os08g10500
Os.11331.1.S1_at--1064--8931Chr08:6162609..6162633 (25 bp)
TGACGAAGCATGCATTCTCTGCTCT
LOC_Os08g10500
Os.11331.1.S1_at--975--9511Chr08:6162624..6162648 (25 bp)
TCTCTGCTCTCCTGTGTTGTGTTGT
LOC_Os08g10500
Os.11331.1.S1_at--809--10831Chr08:6162640..6162664 (25 bp)
TTGTGTTGTTTCAGCTGCGCTGCAC
LOC_Os08g10500
Os.11331.1.S1_at--220--10611Chr08:6162694..6162718 (25 bp)
TTCTGATGAGCAAGCATGGTGGTTC
LOC_Os08g10500
Os.11331.1.S1_at--1003--7511Chr08:6162832..6162856 (25 bp)
GTGGATGTGTTGAGCACCATCTTTT
LOC_Os08g10500
Os.11331.1.S1_at--1055--7171Chr08:6162858..6162882 (25 bp)
GTCTGATGGTGTTTGTTTACTTGAT
LOC_Os08g10500
Target Sequence 
AGGACGGCCCGCAGGAGCAGTACCCCGCCGGCGCCGGCGCCGGCGAGACCACCAGCCGCGGCCACCACCACCACCACCAC
CACGGCGACGGATTCTGGAAAGGATGGTCAGTTCCATCAGCTAGCTTCTCTCCTCATTTCTTTCTCTTTTTCAGATTAAA
ATACTAATTCCTGCTTAATTAATTAACTGTGTGATCTCCTGCTGACGAAGCATGCATTCTCTGCTCTCCTGTGTTGTGTT
GTTTCAGCTGCGCTGCACTCTGCTGCTGCTGCCTCCTCGACATGTGCTTCTGATGAGCAAGCATGGTGGTTCATCGATCA
TGCATGCATGGTGATCATGCCATATGATGTGCTGTGTGTATTGTGTATATCACTAGTTCATATATACTACTCCAGTATTT
ATTGTGTACTTAAATTATGTGTTGAGTGGATGTGTTGAGCACCATCTTTTTGTCTGATGGTGTTTGTTTACTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11331.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis