Browse Element(s) Details


OsAffx.29362.1.S1_at

Description tigr:9636.m01012
TID=OsAffx.29362.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1052010/11hypothetical protein
LOC_Os08g2599010/11alcohol oxidase, putative
LOC_Os08g2689010/11hypothetical protein
LOC_Os12g326601/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10470Os.7442.2.S1_s_at11/118+6148820..6151471SET domain-containing protein, putative, expressed
LOC_Os08g10480OsAffx.29135.1.S1_at10/118+6152778..6155041copper chaperone, putative, expressed
LOC_Os08g10490OsAffx.5778.1.S1_at11/118+6155655..6156859heavy metal-associated domain containing protein
LOC_Os08g10500Os.11331.1.S1_at11/118+6162010..6162949expressed protein
LOC_Os08g10510Os.19524.1.S1_at11/118+6163763..6169452aminotransferase, class III family protein, expressed
LOC_Os08g10510Os.46436.1.S1_at1/118+6163763..6169452aminotransferase, class III family protein, expressed
LOC_Os08g10510OsAffx.26573.1.S1_x_at1/118+6163763..6169452aminotransferase, class III family protein, expressed
LOC_Os08g10520OsAffx.29362.2.S1_s_at11/118+6171521..6172675hypothetical protein
LOC_Os08g10520OsAffx.29362.1.S1_at10/118+6171521..6172675hypothetical protein
LOC_Os08g10520OsAffx.29362.1.S1_x_at10/118+6171521..6172675hypothetical protein
LOC_Os08g10520OsAffx.29362.2.S1_x_at2/118+6171521..6172675hypothetical protein
LOC_Os08g10530OsAffx.5779.1.S1_at11/118+6174816..6175415hypothetical protein
LOC_Os08g10540OsAffx.29113.1.S1_at4/118+6183423..6187844retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006952biological_processdefense response
GO:0009055molecular_functionelectron carrier activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29362.1.S1_at--1050--5711NONE
GACTCCCTGTCCGATAAATATAAAA
NONE
OsAffx.29362.1.S1_at--517--10194Chr08:6172285..6172309 (25 bp)
TATATTTTTATCAACGTATTCACAA
LOC_Os08g10520
OsAffx.29362.1.S1_at--546--6454Chr08:16371396..16371613 (25 bp)
GATCAACAACGTTTTGCCCCCATCG
NONE
OsAffx.29362.1.S1_at--1022--6799Chr12:13652083..13652103 (21 bp)
GTTTTGCCCCCATCGACATTAATGG
NONE
OsAffx.29362.1.S1_at--141--534Chr08:16371610..16371634 (25 bp)
ATCGACATTAATGGGAACACCATCA
NONE
OsAffx.29362.1.S1_at--117--8454Chr08:16371642..16371666 (25 bp)
GGCCAAATTAGCTTGTGACTACATG
NONE
OsAffx.29362.1.S1_at--891--3134Chr08:16371647..16371671 (25 bp)
AATTAGCTTGTGACTACATGTGTGA
NONE
OsAffx.29362.1.S1_at--640--4934Chr08:16371652..16371676 (25 bp)
GCTTGTGACTACATGTGTGATAGGG
NONE
OsAffx.29362.1.S1_at--114--8454Chr08:16371676..16371700 (25 bp)
GGCCAAATTAGCTTGGGAGTACAGG
NONE
OsAffx.29362.1.S1_at--593--7654Chr08:16371690..16371714 (25 bp)
GGGAGTACAGGTGTATATCACAGAT
NONE
OsAffx.29362.1.S1_at--823--7434Chr08:16371700..16371724 (25 bp)
GTGTATATCACAGATGACCGAGCTA
NONE
Target Sequence 
GACTCCCTGTCCGATAAATATAAAAAATATGAAAAAATAANCATATATATTTTTATCAACGTATTCACAATAATTAAATT
AGATCAACAACGTTTTGCCCCCATCGACATTAATGGGAACACCATCAGCATGGGGGCCAAATTAGCTTGTGACTACATGT
GTGATAGGGGCCAAATTAGCTTGGGAGTACAGGTGTATATCACAGATGACCGAGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29362.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis