Browse Element(s) Details


Os.19524.1.S1_at

Description gb:AK103274.1
DB_XREF= gi:32988483
TID=Os.19524.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19524 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033124J10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033124J10, full insert sequence.
FL= gb:AK103274.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1051011/11aminotransferase, class III family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10460NANA8+6139415..6144842retrotransposon protein, putative, unclassified
LOC_Os08g10470Os.7442.2.S1_s_at11/118+6148820..6151471SET domain-containing protein, putative, expressed
LOC_Os08g10480OsAffx.29135.1.S1_at10/118+6152778..6155041copper chaperone, putative, expressed
LOC_Os08g10490OsAffx.5778.1.S1_at11/118+6155655..6156859heavy metal-associated domain containing protein
LOC_Os08g10500Os.11331.1.S1_at11/118+6162010..6162949expressed protein
LOC_Os08g10510Os.19524.1.S1_at11/118+6163763..6169452aminotransferase, class III family protein, expressed
LOC_Os08g10510Os.46436.1.S1_at1/118+6163763..6169452aminotransferase, class III family protein, expressed
LOC_Os08g10510OsAffx.26573.1.S1_x_at1/118+6163763..6169452aminotransferase, class III family protein, expressed
LOC_Os08g10520OsAffx.29362.2.S1_s_at11/118+6171521..6172675hypothetical protein
LOC_Os08g10520OsAffx.29362.1.S1_at10/118+6171521..6172675hypothetical protein
LOC_Os08g10520OsAffx.29362.1.S1_x_at10/118+6171521..6172675hypothetical protein
LOC_Os08g10520OsAffx.29362.2.S1_x_at2/118+6171521..6172675hypothetical protein
LOC_Os08g10530OsAffx.5779.1.S1_at11/118+6174816..6175415hypothetical protein
LOC_Os08g10540OsAffx.29113.1.S1_at4/118+6183423..6187844retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006561biological_processproline biosynthesis
GO:0009102biological_processbiotin biosynthesis
GO:0009860biological_processpollen tube growth
GO:0009865biological_processpollen tube adhesion
GO:0042538biological_processhyperosmotic salinity response
GO:0005739cellular_componentmitochondrion
GO:0003867molecular_function4-aminobutyrate transaminase activity
GO:0004015molecular_functionadenosylmethionine-8-amino-7-oxononanoate transaminase activity
GO:0004587molecular_functionornithine-oxo-acid transaminase activity
GO:0008453molecular_functionalanine-glyoxylate transaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19524.1.S1_at--942--931Chr08:6164893..6164917 (25 bp)
AGGAATATCATCGAACATGTTCAGA
LOC_Os08g10510
Os.19524.1.S1_at--381--5511Chr08:6164870..6164894 (25 bp)
GAAAATTGCCCCAAGGTTCCAGGAG
LOC_Os08g10510
Os.19524.1.S1_at--462--8151Chr08:6164831..6164851 (21 bp)
GGAAGTCCAATTGTAGGCGAGATAC
LOC_Os08g10510
Os.19524.1.S1_at--10--6491Chr08:6164711..6164735 (25 bp)
GATACGTGGTTTAGGACTGATACTT
LOC_Os08g10510
Os.19524.1.S1_at--1036--6471Chr08:6164693..6164717 (25 bp)
GATACTTGGGACTGAATTTGTCGAC
LOC_Os08g10510
Os.19524.1.S1_at--667--10211Chr08:6164677..6164701 (25 bp)
TTTGTCGACAACAAGTCTCCGAATG
LOC_Os08g10510
Os.19524.1.S1_at--187--4571Chr08:6164208..6164232 (25 bp)
GCGCGGAATGCTTATCAGGGTTGCT
LOC_Os08g10510
Os.19524.1.S1_at--823--4211Chr08:6164159..6164183 (25 bp)
CCGCTTATAATGACTCCTGATGAAG
LOC_Os08g10510
Os.19524.1.S1_at--724--10111Chr08:6164012..6164036 (25 bp)
TATGGTGATGCCCTGAAGGCCACAG
LOC_Os08g10510
Os.19524.1.S1_at--538--1991Chr08:6163941..6163965 (25 bp)
ACTGCCGCTGTCGTTGTTGTAGTGA
LOC_Os08g10510
Os.19524.1.S1_at--166--1691Chr08:6163837..6163861 (25 bp)
AGCCTGAAGCTTGTTCTAGATGCGA
LOC_Os08g10510
Target Sequence 
AGGAATATCATCGAACATGTTCAGAAAATTGCCCCAAGGTTCCAGGAGGGAATCAANGCCTTCTCTGGAAGTCCAATTGT
AGGCGAGATACGTGGTTTAGGACTGATACTTGGGACTGAATTTGTCGACAACAAGTCTCCGAATGATCCANTTCCCTGCN
GAATGGGGTGTTGGTTCATTGTTTGGTGCNGAGTGTGAGAAGCGCGGAATGCTTATCAGGGTTGCTGGGGATAACATTAT
GCTTTCGCCNCCGCTTATAATGACTCCTGATGAAGTTGAAGAAATTATTNGCAAATATGGTGATGCCCTGAAGGCCACAG
AGGAAAGGATTGCAGAGCTCAAAGCCAAGAGGGGTTAGCCATTGCCACTGCCGCTGTCGTTGTTGTAGTGATTGATGATN
GGTGATGACNAATTGACAATGTTNAATGTATACAGAGTGGTTTCATCTGTAGATNGCCAATAATGAANTGTAAGCCTGAA
GCTTGTTCTAGATGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19524.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis