Browse Element(s) Details


OsAffx.29135.1.S1_at

Description tigr:9636.m01008
TID=OsAffx.29135.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=copper chaperone
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1048010/11copper chaperone, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10440OsAffx.29134.1.S1_at11/118+6131714..6135162NB-ARC domain containing protein, expressed
LOC_Os08g10440Os.23329.1.S1_s_at11/118+6131714..6135162NB-ARC domain containing protein, expressed
LOC_Os08g10450Os.5801.1.S1_at11/118+6135784..6138033equilibratiave nucleoside transporter 1, putative, expressed
LOC_Os08g10460NANA8+6139415..6144842retrotransposon protein, putative, unclassified
LOC_Os08g10470Os.7442.2.S1_s_at11/118+6148820..6151471SET domain-containing protein, putative, expressed
LOC_Os08g10480OsAffx.29135.1.S1_at10/118+6152778..6155041copper chaperone, putative, expressed
LOC_Os08g10490OsAffx.5778.1.S1_at11/118+6155655..6156859heavy metal-associated domain containing protein
LOC_Os08g10500Os.11331.1.S1_at11/118+6162010..6162949expressed protein
LOC_Os08g10510Os.19524.1.S1_at11/118+6163763..6169452aminotransferase, class III family protein, expressed
LOC_Os08g10510Os.46436.1.S1_at1/118+6163763..6169452aminotransferase, class III family protein, expressed
LOC_Os08g10510OsAffx.26573.1.S1_x_at1/118+6163763..6169452aminotransferase, class III family protein, expressed
LOC_Os08g10520OsAffx.29362.2.S1_s_at11/118+6171521..6172675hypothetical protein
LOC_Os08g10520OsAffx.29362.1.S1_at10/118+6171521..6172675hypothetical protein
LOC_Os08g10520OsAffx.29362.1.S1_x_at10/118+6171521..6172675hypothetical protein
LOC_Os08g10520OsAffx.29362.2.S1_x_at2/118+6171521..6172675hypothetical protein
LOC_Os08g10530OsAffx.5779.1.S1_at11/118+6174816..6175415hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000302biological_processresponse to reactive oxygen species
GO:0006827biological_processhigh affinity iron ion transport
GO:0006878biological_processcopper ion homeostasis
GO:0007568biological_processaging
GO:0030001biological_processmetal ion transport
GO:0016531molecular_functioncopper chaperone activity
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29135.1.S1_at--62--5831NONE
GACCGCCATGGCTGAGACTGTTGTG
NONE
OsAffx.29135.1.S1_at--850--1091Chr08:6154645..6154669 (25 bp)
AGTGGAGTCCTTTGACGTAGACATC
LOC_Os08g10480
OsAffx.29135.1.S1_at--377--6771Chr08:6154700..6154724 (25 bp)
GTTACACCAGATGCCGTTCTTCAGA
LOC_Os08g10480
OsAffx.29135.1.S1_at--101--4511Chr08:6154712..6154736 (25 bp)
GCCGTTCTTCAGACCGTTTCAAAGA
LOC_Os08g10480
OsAffx.29135.1.S1_at--566--2771Chr08:6154745..6154769 (25 bp)
AAGACCTCGTTCTGGGATGCTGAGC
LOC_Os08g10480
OsAffx.29135.1.S1_at--771--4471Chr08:6154768..6154792 (25 bp)
GCCTGCACCTGTTGAAGCTACTGCT
LOC_Os08g10480
OsAffx.29135.1.S1_at--350--4851Chr08:6154784..6154808 (25 bp)
GCTACTGCTGCTTCATCTTAAAATG
LOC_Os08g10480
OsAffx.29135.1.S1_at--244--7911Chr08:6154835..6154859 (25 bp)
GGTTGATGTAACAATTTCCCAGTGG
LOC_Os08g10480
OsAffx.29135.1.S1_at--320--4351Chr08:6154853..6154877 (25 bp)
CCAGTGGAACTGTCTTGTGAGATCA
LOC_Os08g10480
OsAffx.29135.1.S1_at--574--3291Chr08:6154878..6154902 (25 bp)
CAAAGTTGTCTGTTCTTATGATCAT
LOC_Os08g10480
OsAffx.29135.1.S1_at--145--6891Chr08:6154959..6154983 (25 bp)
GTATTTCTCTATCCTACCAGTATTG
LOC_Os08g10480
Target Sequence 
GACCGCCATGGCTGAGACTGTTGTGCTCAGGGTTGGGATGTCCTGTGAAGGTTGTGTTGGAGCTGTTAAGCGGGTACTGG
GAAAGATGCAAGGAGTGGAGTCCTTTGACGTAGACATCAAGGAGCAGAAGGTCACTGTCAAGGGAAATGTTACACCAGAT
GCCGTTCTTCAGACCGTTTCAAAGACGGGCAAGAAGACCTCGTTCTGGGATGCTGAGCCTGCACCTGTTGAAGCTACTGC
TGCTTCATCTTAAAATGTCATTTTATCTCCTGTGATATGTAAAGGTTGATGTAACAATTTCCCAGTGGAACTGTCTTGTG
AGATCACAAAGTTGTCTGTTCTTATGATCATAACTTGAAGCTATTTCAAATAATATCAGACAGCTAGTTACACATATGTA
CATCTTTGTATTTCTCTATCCTACCAGTATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29135.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis