Browse Element(s) Details


OsAffx.5779.1.S1_at

Description tigr:9636.m01013
TID=OsAffx.5779.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1053011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10470Os.7442.2.S1_s_at11/118+6148820..6151471SET domain-containing protein, putative, expressed
LOC_Os08g10480OsAffx.29135.1.S1_at10/118+6152778..6155041copper chaperone, putative, expressed
LOC_Os08g10490OsAffx.5778.1.S1_at11/118+6155655..6156859heavy metal-associated domain containing protein
LOC_Os08g10500Os.11331.1.S1_at11/118+6162010..6162949expressed protein
LOC_Os08g10510Os.19524.1.S1_at11/118+6163763..6169452aminotransferase, class III family protein, expressed
LOC_Os08g10510Os.46436.1.S1_at1/118+6163763..6169452aminotransferase, class III family protein, expressed
LOC_Os08g10510OsAffx.26573.1.S1_x_at1/118+6163763..6169452aminotransferase, class III family protein, expressed
LOC_Os08g10520OsAffx.29362.2.S1_s_at11/118+6171521..6172675hypothetical protein
LOC_Os08g10520OsAffx.29362.1.S1_at10/118+6171521..6172675hypothetical protein
LOC_Os08g10520OsAffx.29362.1.S1_x_at10/118+6171521..6172675hypothetical protein
LOC_Os08g10520OsAffx.29362.2.S1_x_at2/118+6171521..6172675hypothetical protein
LOC_Os08g10530OsAffx.5779.1.S1_at11/118+6174816..6175415hypothetical protein
LOC_Os08g10540OsAffx.29113.1.S1_at4/118+6183423..6187844retrotransposon protein, putative, unclassified
LOC_Os08g10550Os.17644.1.S1_at7/118+6200351..6204827Potassium transporter 11, putative, expressed
LOC_Os08g10550OsAffx.26001.3.S1_x_at1/118+6200351..6204827Potassium transporter 11, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5779.1.S1_at--916--811Chr08:6175349..6175373 (25 bp)
ATGGTCGGCCAGAGACTGTCCTTGA
LOC_Os08g10530
OsAffx.5779.1.S1_at--1070--5951Chr08:6175274..6175298 (25 bp)
GAGAAGGCCATTCGCCACATTACCG
LOC_Os08g10530
OsAffx.5779.1.S1_at--608--9331Chr08:6175193..6175217 (25 bp)
TCGCCTGACGCTTTGTGCGCTAACC
LOC_Os08g10530
OsAffx.5779.1.S1_at--1007--7251Chr08:6175163..6175187 (25 bp)
GTCCTACTTGAGGTGCGACCCTGTT
LOC_Os08g10530
OsAffx.5779.1.S1_at--446--5811Chr08:6175147..6175171 (25 bp)
GACCCTGTTGGATCGACGACCGGCA
LOC_Os08g10530
OsAffx.5779.1.S1_at--324--1291Chr08:6175117..6175141 (25 bp)
AGATCGAGGAGAGGCCACCATCGTG
LOC_Os08g10530
OsAffx.5779.1.S1_at--937--871Chr08:6175106..6175130 (25 bp)
AGGCCACCATCGTGGAGATTCTTCC
LOC_Os08g10530
OsAffx.5779.1.S1_at--289--3551Chr08:6175002..6175026 (25 bp)
CATCGAGCTCGTTGTTATCGCACAA
LOC_Os08g10530
OsAffx.5779.1.S1_at--448--10431Chr08:6174988..6175012 (25 bp)
TTATCGCACAATCCATGCGGCGGCA
LOC_Os08g10530
OsAffx.5779.1.S1_at--564--8531Chr08:6174885..6174909 (25 bp)
TGGAGACGAAGCTCCTTGGCAGATG
LOC_Os08g10530
OsAffx.5779.1.S1_at--744--5611Chr08:6174851..6174875 (25 bp)
GACAAGCCTTGGACAACATCGGCGA
LOC_Os08g10530
Target Sequence 
ATGGTCGGCCAGAGACTGTCCTTGACGGGGGCGCTGTTGGGCATACCGCCGGGGTGTGGCTGCGCGATGGTGGAGGAGAA
GGCCATTCGCCACATTACCGGGCGCCGTGGAAGGGGGATGCGGCGGCGACGGCAGCATAAGGGGGAAGCCACCGCCTCGC
CTGACGCTTTGTGCGCTAACCCCTCGGTCCTACTTGAGGTGCGACCCTGTTGGATCGACGACCGGCAGCGTCAGATCGAG
GAGAGGCCACCATCGTGGAGATTCTTCCCGCCCCGCATCCACCACCCCCATCGGTTACAGCTTCTCCCCTACCGTCGCCG
AGAAGCTCGCGGTGGAGGAAGGGGCGTCATCGAGCTCGTTGTTATCGCACAATCCATGCGGCGGCAGAGATGGACAAGGC
AGGGGAAATACGGTGGCGGGAGAGATGGGGCGACACGGTGGGGTGCCTGTAGAGGCCGGCGGTGTGGAGACGAAGCTCCT
TGGCAGATGGTTGGCGGTGACAAGCCTTGGACAACATCGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5779.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis