Browse Element(s) Details


Os.17644.1.S1_at

Description gb:AK069377.1
DB_XREF= gi:32979401
TID=Os.17644.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17644 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023012J20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012J20, full insert sequence.
FL= gb:AK069377.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g105507/11Potassium transporter 11, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10530OsAffx.5779.1.S1_at11/118+6174816..6175415hypothetical protein
LOC_Os08g10540OsAffx.29113.1.S1_at4/118+6183423..6187844retrotransposon protein, putative, unclassified
LOC_Os08g10550Os.17644.1.S1_at7/118+6200351..6204827Potassium transporter 11, putative, expressed
LOC_Os08g10550OsAffx.26001.3.S1_x_at1/118+6200351..6204827Potassium transporter 11, putative, expressed
LOC_Os08g10560OsAffx.16936.1.S1_at11/118+6205731..6211933Histone-like transcription factor and archaeal histone family protein
LOC_Os08g10560OsAffx.30713.1.S1_at5/118+6205731..6211933Histone-like transcription factor and archaeal histone family protein
LOC_Os08g10560OsAffx.30713.1.S1_x_at1/118+6205731..6211933Histone-like transcription factor and archaeal histone family protein
LOC_Os08g10570Os.15538.1.S1_at10/118+6212346..6217696bifunctional purine biosynthesis protein PurH containing protein, expressed
LOC_Os08g10580Os.53222.1.S1_at10/118+6219930..6224960Methyl-CpG binding domain containing protein, expressed
LOC_Os08g10580OsAffx.24875.1.S1_at1/118+6219930..6224960Methyl-CpG binding domain containing protein, expressed
LOC_Os08g10590OsAffx.29136.1.S1_x_at11/118+6225725..6227789expressed protein
LOC_Os08g10590Os.27409.1.A1_at10/118+6225725..6227789expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009605biological_processresponse to external stimulus
GO:0015079molecular_functionpotassium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17644.1.S1_at--320--2131Chr08:6204521..6204545 (25 bp)
ACAGGACTCCATTGTTCCAGCCAAG
LOC_Os08g10550
Os.17644.1.S1_at--361--10671Chr08:6204535..6204559 (25 bp)
TTCCAGCCAAGTCACCCATAAGAGG
LOC_Os08g10550
Os.17644.1.S1_at--900--9771Chr08:6204553..6204577 (25 bp)
TAAGAGGGAACAGCCTGACAAGGTA
LOC_Os08g10550
Os.17644.1.S1_at--1029--6591Chr08:6204623..6204647 (25 bp)
GTTCCTGAACCGGTGCAAGGACGCT
LOC_Os08g10550
Os.17644.1.S1_at--182--2931Chr08:6204639..6204663 (25 bp)
AAGGACGCTGGTGTCGTGCACATCC
LOC_Os08g10550
Os.17644.1.S1_at--934--7611Chr08:6204666..6204690 (25 bp)
GGGAACACTGTGGTTCACGCGCGCC
LOC_Os08g10550
Os.17644.1.S1_at--109--5571Chr08:6204789..6204813 (25 bp)
GAAAGTCTTCTCAATGTAGGCCAGA
LOC_Os08g10550
Os.17644.1.S1_at--1020--8651Chr08:6204906..6204930 (25 bp)
TGTGTAGGCCTAGATGAACTTGTAA
NONE
Os.17644.1.S1_at--698--6091Chr08:6204944..6204968 (25 bp)
GAGTAAGGTTCATTCATCATTTTTT
NONE
Os.17644.1.S1_at--391--6351Chr08:6204988..6205012 (25 bp)
GATGCTGTAGATGCCATGTCCTCTG
NONE
Os.17644.1.S1_at--269--9251Chr08:6205006..6205030 (25 bp)
TCCTCTGTCAGCCTAACCAGTAAAG
NONE
Target Sequence 
ACAGGACTCCATTGTTCCAGCCAAGTCACCCATAAGAGGGAACAGCCTGACAAGGTANNNNNNNNANANGNTNNNCGANN
ANNNGNNNNNNNTGAACCTGGAGTTCCTGAACCGGTGCAAGGACGCTGGTGTCGTGCACATCCTGGGGAACACTGTGGTT
CACGCGCGCCCTGATTCNGGGATCATCAAGAAGGTTGCTGTGAATTATGTGTTTGCATTCCTCAGGNAAGATCTGCAGGG
AGAACAGTGTGATATTNCAATGNTTCCCCATGAAAGTCTTCTCAATGTAGGCCAGATATACTATATATGAACATTTTTTG
TTCTTTGGTTTCTGATTCAGAGAGTGAGCAGGTGTGACAAGAGAGTGAGCAGGTGTGACATTCTNCTGTGTGTAGGCCTA
GATGAACTTGTAAATGATCAGTTCTAGAGTAAGGTTCATTCATCATTTTTTTNCCCCTGTCAGTATGAAATGATGCTGTA
GATGCCATGTCCTCTGTCAGCCTAACCAGTAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17644.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis