Browse Element(s) Details


Os.15538.1.S1_at

Description gb:AK064336.1
DB_XREF= gi:32974354
TID=Os.15538.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.15538 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033107D20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-G10, full insert sequence.
FL= gb:AK102764.1 gb:AK064336.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1057010/11bifunctional purine biosynthesis protein PurH containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10540OsAffx.29113.1.S1_at4/118+6183423..6187844retrotransposon protein, putative, unclassified
LOC_Os08g10550Os.17644.1.S1_at7/118+6200351..6204827Potassium transporter 11, putative, expressed
LOC_Os08g10550OsAffx.26001.3.S1_x_at1/118+6200351..6204827Potassium transporter 11, putative, expressed
LOC_Os08g10560OsAffx.16936.1.S1_at11/118+6205731..6211933Histone-like transcription factor and archaeal histone family protein
LOC_Os08g10560OsAffx.30713.1.S1_at5/118+6205731..6211933Histone-like transcription factor and archaeal histone family protein
LOC_Os08g10560OsAffx.30713.1.S1_x_at1/118+6205731..6211933Histone-like transcription factor and archaeal histone family protein
LOC_Os08g10570Os.15538.1.S1_at10/118+6212346..6217696bifunctional purine biosynthesis protein PurH containing protein, expressed
LOC_Os08g10580Os.53222.1.S1_at10/118+6219930..6224960Methyl-CpG binding domain containing protein, expressed
LOC_Os08g10580OsAffx.24875.1.S1_at1/118+6219930..6224960Methyl-CpG binding domain containing protein, expressed
LOC_Os08g10590OsAffx.29136.1.S1_x_at11/118+6225725..6227789expressed protein
LOC_Os08g10590Os.27409.1.A1_at10/118+6225725..6227789expressed protein
LOC_Os08g10600Os.8341.1.S1_at11/118+6231107..6235779UDP-N-acetylglucosamine pyrophosphorylase, putative, expressed
LOC_Os08g10604OsAffx.29137.1.S1_at11/118+6235817..6237381Pectinesterase family protein, expressed
LOC_Os08g10608Os.9287.1.S1_at11/118+6237621..624080540S ribosomal protein S11, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006164biological_processpurine nucleotide biosynthesis
GO:0003937molecular_functionIMP cyclohydrolase activity
GO:0004643molecular_functionphosphoribosylaminoimidazolecarboxamide formyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15538.1.S1_at--428--4391Chr08:6216519..6216543 (25 bp)
GCCAAATTTGCCTGGCTTTGTGTAA
LOC_Os08g10570
Os.15538.1.S1_at--751--6091Chr08:6216554..6216578 (25 bp)
GAGTAACGCCATTGTGATAGCCAAG
LOC_Os08g10570
Os.15538.1.S1_at--130--651NONE
ATGCATTCTTCCCATTCGCTTGGAA
NONE
Os.15538.1.S1_at--1150--8231Chr08:6217439..6217463 (25 bp)
GGCACTTCAGGCACTGAGCTAGCTA
LOC_Os08g10570
Os.15538.1.S1_at--504--5911Chr08:6217454..6217478 (25 bp)
GAGCTAGCTAGCCTCATGAACCTTG
LOC_Os08g10570
Os.15538.1.S1_at--70--9631Chr08:6217467..6217491 (25 bp)
TCATGAACCTTGATCTTCCTGCAAA
LOC_Os08g10570
Os.15538.1.S1_at--1127--3491Chr08:6217506..6217530 (25 bp)
CATGGGCATGTCAGATCGATCGCTC
LOC_Os08g10570
Os.15538.1.S1_at--748--1351Chr08:6217544..6217568 (25 bp)
AGAGCATGCAGATCGACCAGCGTTT
LOC_Os08g10570
Os.15538.1.S1_at--918--1711Chr08:6217559..6217583 (25 bp)
ACCAGCGTTTGATCACCTTGAGAAA
LOC_Os08g10570
Os.15538.1.S1_at--911--2531Chr08:6217584..6217608 (25 bp)
AACTCTTGACGGCTTGTACTAGGCT
LOC_Os08g10570
Os.15538.1.S1_at--208--4791Chr08:6217606..6217630 (25 bp)
GCTGCCTGCCACTGGTGTGACAGAA
LOC_Os08g10570
Target Sequence 
GCCAAATTTGCCTGGCTTTGTGTAAAGCACGTAAAGAGTAACGCCATTGTGATAGCCAAGAATAACTGCATGTTAGGCAT
GGGAAGTGGCCAGCCAAACAGACTGGAGAGTCTGAGAATTGCTTTCAGGAAAGCAGGAGAGGAGGCCAAAGGAGCTGCTT
TGGCCAGTGATGCATTCTTCCCATTCGCTTGGAACGACGCCGTGGANGAGGCGTGCCAGAACGGCATCGGCGTGATCGCG
GAGCCGAGCGGCAGCATGAGGGACGGCGACGCCGTCGACTGCTGCAACAAGTACGGCGTCTCCCTCCTCTTCACCGGCGT
CAGGCACTTCAGGCACTGAGCTAGCTAGCCTCATGAACCTTGATCTTCCTGCAAAAAAAGGAAAAAAAACATGGGCATGT
CAGATCGATCGCTCTTNTCTGTATCACAAGAGCATGCAGATCGACCAGCGTTTGATCACCTTGAGAAAAACTCTTGACGG
CTTGTACTAGGCTGCCTGCCACTGGTGTGACAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15538.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis