Browse Element(s) Details


Os.8341.1.S1_at

Description gb:AK071409.1
DB_XREF= gi:32981432
TID=Os.8341.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8341 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023091K19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023091K19, full insert sequence.
FL= gb:AK071409.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1060011/11UDP-N-acetylglucosamine pyrophosphorylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10560OsAffx.16936.1.S1_at11/118+6205731..6211933Histone-like transcription factor and archaeal histone family protein
LOC_Os08g10560OsAffx.30713.1.S1_at5/118+6205731..6211933Histone-like transcription factor and archaeal histone family protein
LOC_Os08g10560OsAffx.30713.1.S1_x_at1/118+6205731..6211933Histone-like transcription factor and archaeal histone family protein
LOC_Os08g10570Os.15538.1.S1_at10/118+6212346..6217696bifunctional purine biosynthesis protein PurH containing protein, expressed
LOC_Os08g10580Os.53222.1.S1_at10/118+6219930..6224960Methyl-CpG binding domain containing protein, expressed
LOC_Os08g10580OsAffx.24875.1.S1_at1/118+6219930..6224960Methyl-CpG binding domain containing protein, expressed
LOC_Os08g10590OsAffx.29136.1.S1_x_at11/118+6225725..6227789expressed protein
LOC_Os08g10590Os.27409.1.A1_at10/118+6225725..6227789expressed protein
LOC_Os08g10600Os.8341.1.S1_at11/118+6231107..6235779UDP-N-acetylglucosamine pyrophosphorylase, putative, expressed
LOC_Os08g10604OsAffx.29137.1.S1_at11/118+6235817..6237381Pectinesterase family protein, expressed
LOC_Os08g10608Os.9287.1.S1_at11/118+6237621..624080540S ribosomal protein S11, putative, expressed
LOC_Os08g10612Os.57002.1.S1_at11/118+6245011..6245864expressed protein
LOC_Os08g10620OsAffx.16937.2.S1_at9/118+6249568..6251757hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0016779molecular_functionnucleotidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8341.1.S1_at--417--10071Chr08:6235110..6235134 (25 bp)
TAGTGCCAGATTAATGCTGCTCCGC
LOC_Os08g10600
Os.8341.1.S1_at--145--4311Chr08:6235134..6235158 (25 bp)
CCTTCACAGCCGATGGGTGGTAGCT
LOC_Os08g10600
Os.8341.1.S1_at--272--3851Chr08:6235157..6235181 (25 bp)
CTGCAGGTGGCTTTTTGACTCATTC
LOC_Os08g10600
Os.8341.1.S1_at--955--3591Chr08:6235177..6235201 (25 bp)
CATTCCGTGCCCTTGTATATGACAG
LOC_Os08g10600
Os.8341.1.S1_at--1048--5431Chr08:6235348..6235372 (25 bp)
GAACCTGGAAGCCATATGCCGTGGA
LOC_Os08g10600
Os.8341.1.S1_at--485--5291Chr08:6235471..6235495 (25 bp)
GAATGGCAGGATCCCTCAATTTTCA
LOC_Os08g10600
Os.8341.1.S1_at--433--1251Chr08:6235515..6235539 (25 bp)
AGTTGGACTTGAGCTCTTGCAGTTA
LOC_Os08g10600
Os.8341.1.S1_at--228--1171Chr08:6235553..6235577 (25 bp)
AGTCAGCTTGTTGTAATGCCAGTAA
LOC_Os08g10600
Os.8341.1.S1_at--793--2231Chr08:6235588..6235612 (25 bp)
ACAATTGGAGTTGGCTCCCTTTCCA
LOC_Os08g10600
Os.8341.1.S1_at--709--9231Chr08:6235609..6235633 (25 bp)
TCCATGTACCATTTTTGTGCTGCTC
LOC_Os08g10600
Os.8341.1.S1_at--70--2771Chr08:6235690..6235714 (25 bp)
AAGACTGGTCTATGCACAATTGTTA
LOC_Os08g10600
Target Sequence 
TAGTGCCAGATTAATGCTGCTCCGCCTTCACAGCCGATGGGTGGTAGCTGCAGGTGGCTTTTTGACTCATTCCGTGCCCT
TGTATATGACAGGTGTTGAAGTTTCTCCACTTAGCTCTTATGCGGGAGAGAACCTGGAAGCCATATGCCGTGGACGGACA
TTCCATGCACCGAGTGAGATTTCATTTTAGGAATAGTGTCTGTCGAAAGCAACAGTCTCAGACCCAGCTAAAAAGCATCT
GTCTCAAGAAGAGAATGGCAGGATCCCTCAATTTTCATTNGGACATGAGATGAGATAGTTGGACTTGAGCTCTTGCAGTT
AGAATGTTGATATTAGTCAGCTTGTTGTAATGCCAGTAATTGTAATTCAACAATTGGAGTTGGCTCCCTTTCCATGTACC
ATTTTTGTGCTGCTCAAATGTAGATGATCAAACAATGGCTAAATCTTCTGTAAAAAATAATACATCTCTGTAAGACTGGT
CTATGCACAATTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8341.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis