Browse Element(s) Details


OsAffx.29137.1.S1_at

Description tigr:9636.m01021
TID=OsAffx.29137.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Pectinesterase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1060411/11Pectinesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10560OsAffx.16936.1.S1_at11/118+6205731..6211933Histone-like transcription factor and archaeal histone family protein
LOC_Os08g10560OsAffx.30713.1.S1_at5/118+6205731..6211933Histone-like transcription factor and archaeal histone family protein
LOC_Os08g10560OsAffx.30713.1.S1_x_at1/118+6205731..6211933Histone-like transcription factor and archaeal histone family protein
LOC_Os08g10570Os.15538.1.S1_at10/118+6212346..6217696bifunctional purine biosynthesis protein PurH containing protein, expressed
LOC_Os08g10580Os.53222.1.S1_at10/118+6219930..6224960Methyl-CpG binding domain containing protein, expressed
LOC_Os08g10580OsAffx.24875.1.S1_at1/118+6219930..6224960Methyl-CpG binding domain containing protein, expressed
LOC_Os08g10590OsAffx.29136.1.S1_x_at11/118+6225725..6227789expressed protein
LOC_Os08g10590Os.27409.1.A1_at10/118+6225725..6227789expressed protein
LOC_Os08g10600Os.8341.1.S1_at11/118+6231107..6235779UDP-N-acetylglucosamine pyrophosphorylase, putative, expressed
LOC_Os08g10604OsAffx.29137.1.S1_at11/118+6235817..6237381Pectinesterase family protein, expressed
LOC_Os08g10608Os.9287.1.S1_at11/118+6237621..624080540S ribosomal protein S11, putative, expressed
LOC_Os08g10612Os.57002.1.S1_at11/118+6245011..6245864expressed protein
LOC_Os08g10620OsAffx.16937.2.S1_at9/118+6249568..6251757hypothetical protein
LOC_Os08g10630Os.54471.1.S1_at11/118+6261481..6264553ZIP zinc/iron transport family protein, expressed
LOC_Os08g10630Os.47413.1.S1_x_at1/118+6261481..6264553ZIP zinc/iron transport family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005618cellular_componentcell wall
GO:0005737cellular_componentcytoplasm
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29137.1.S1_at--696--7291Chr08:6236503..6236527 (25 bp)
GTGCGCAAGATACGCTTCACGATGA
LOC_Os08g10604
OsAffx.29137.1.S1_at--506--3991Chr08:6236477..6236501 (25 bp)
CGTGGCCGGCATTACTTCAAGGAAT
LOC_Os08g10604
OsAffx.29137.1.S1_at--260--2991Chr08:6236455..6236479 (25 bp)
AATGCTTCATCCAGGGTTCCATTGA
LOC_Os08g10604
OsAffx.29137.1.S1_at--664--8051Chr08:6236421..6236444 (24 bp)
GGAGATGCCAGGTCACTCTATGAAA
LOC_Os08g10604
OsAffx.29137.1.S1_at--743--7711Chr08:6236307..6236331 (25 bp)
GGGTGATTTCCATAGCAGATCCTGT
LOC_Os08g10604
OsAffx.29137.1.S1_at--233--391Chr08:6236263..6236287 (25 bp)
ATCACAGGTTCAGTCACTGCGCATG
LOC_Os08g10604
OsAffx.29137.1.S1_at--908--4971Chr08:6236243..6236267 (25 bp)
GCATGCCCGGGAATCTGTAGACGAC
LOC_Os08g10604
OsAffx.29137.1.S1_at--302--1551Chr08:6236191..6236215 (25 bp)
AGCATTGGCGGCACCGGCAGGATAT
LOC_Os08g10604
OsAffx.29137.1.S1_at--995--8051Chr08:6236151..6236175 (25 bp)
GGAGACCATATTCCACAGTCGTCTT
LOC_Os08g10604
OsAffx.29137.1.S1_at--42--6371Chr08:6236071..6236095 (25 bp)
GATCCTTCAAGAGACCAGTATGCAT
LOC_Os08g10604
OsAffx.29137.1.S1_at--1021--10371Chr08:6235872..6235896 (25 bp)
TTTTGCCTTACCTGAACACTTCTTT
LOC_Os08g10604
Target Sequence 
GTGCGCAAGATACGCTTCACGATGATCGTGGCCGGCATTACTTCAAGGAATGCTTCATCCAGGGTTCCATTGACTTTATC
TTTGGAGATGCCAGGTCACTCTATGAAAATTGCAGGGTGATTTCCATAGCAGATCCTGTTCCTGCAGGGGTGAGAACCAT
CACAGGTTCAGTCACTGCGCATGCCCGGGAATCTGTAGACGACAACACTGGCTACTCTTTTGTCAATTGCAGCATTGGCG
GCACCGGCAGGATATGGCTGGGGAGAGCATGGAGACCATATTCCACAGTCGTCTTCGCCTACACTTCAATGTCAGACATC
ATTGCCTCTGAAGGATGGAATGATTGGAATGATCCTTCAAGAGACCAGTATGCATCCTCTCTCTATTCAGTGTCAATTGT
TACCTGCATGACAAAAAGGACTGTGTTCTATGGAGAGTACAGGTGCACGGGTGATGGTGCAAACTTATCAGATAGAGTGC
CATATGCTCAGAAGCTTAGTGATGTGCAGGTTTTGCCTTACCTGAACACTTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29137.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis