Browse Element(s) Details


Os.54471.1.S1_at

Description gb:AK105258.1
DB_XREF= gi:32990467
TID=Os.54471.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54471 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-114-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-G07, full insert sequence.
FL= gb:AK105258.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1063011/11ZIP zinc/iron transport family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10604OsAffx.29137.1.S1_at11/118+6235817..6237381Pectinesterase family protein, expressed
LOC_Os08g10608Os.9287.1.S1_at11/118+6237621..624080540S ribosomal protein S11, putative, expressed
LOC_Os08g10612Os.57002.1.S1_at11/118+6245011..6245864expressed protein
LOC_Os08g10620OsAffx.16937.2.S1_at9/118+6249568..6251757hypothetical protein
LOC_Os08g10630Os.54471.1.S1_at11/118+6261481..6264553ZIP zinc/iron transport family protein, expressed
LOC_Os08g10630Os.47413.1.S1_x_at1/118+6261481..6264553ZIP zinc/iron transport family protein, expressed
LOC_Os08g10649Os.23567.2.S1_at11/118+6265872..6274575GTP-binding protein ERG, putative, expressed
LOC_Os08g10649Os.23567.1.S1_at11/118+6265872..6274575GTP-binding protein ERG, putative, expressed
LOC_Os08g10670Os.54821.1.S1_at11/118+6274879..6280325Eukaryotic aspartyl protease family protein, expressed
LOC_Os08g10680NANA8+6287738..6288025hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0006829biological_processzinc ion transport
GO:0010043biological_processresponse to zinc ion
GO:0030001biological_processmetal ion transport
GO:0009507cellular_componentchloroplast
GO:0016020cellular_componentmembrane
GO:0005375molecular_functioncopper ion transporter activity
GO:0005385molecular_functionzinc ion transporter activity
GO:0008324molecular_functioncation transporter activity
GO:0046873molecular_functionmetal ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54471.1.S1_at--846--4891Chr08:6263993..6264017 (25 bp)
GCTTCAGCTGGCAGTATACCTCGCC
LOC_Os08g10630
Os.54471.1.S1_at--340--9451Chr08:6264025..6264049 (25 bp)
TCGGCGCTGGGATGATGTCTCTGCT
LOC_Os08g10630
Os.54471.1.S1_at--618--711Chr08:6264036..6264060 (25 bp)
ATGATGTCTCTGCTTGCCATATGGG
LOC_Os08g10630
Os.54471.1.S1_at--584--7591Chr08:6264058..6264082 (25 bp)
GGGCATGAGATCTTCAGAGCAACCA
LOC_Os08g10630
Os.54471.1.S1_at--356--2751Chr08:6264116..6264140 (25 bp)
AAGACACCCTGAGCTTAGTTTGTAG
LOC_Os08g10630
Os.54471.1.S1_at--511--2131Chr08:6264144..6264168 (25 bp)
ACAGGGTTTGATGTTGTCATAGCAT
LOC_Os08g10630
Os.54471.1.S1_at--1147--3391Chr08:6264178..6264202 (25 bp)
CAGCTTTTGTAGAATCTCCATCAAC
LOC_Os08g10630
Os.54471.1.S1_at--712--2411Chr08:6264416..6264440 (25 bp)
AAAAATGATGACCTCCTTTTGGAGT
LOC_Os08g10630
Os.54471.1.S1_at--1099--7011Chr08:6264451..6264475 (25 bp)
GTACAGATTCTCAGCTAGGGTAAAT
LOC_Os08g10630
Os.54471.1.S1_at--470--5911Chr08:6264492..6264516 (25 bp)
GAGCTCTGTGAAGTTTGTTCACTTG
LOC_Os08g10630
Os.54471.1.S1_at--1045--5371Chr08:6264523..6264547 (25 bp)
GAAGAATCAAATAATCCCCAGCGTT
LOC_Os08g10630
Target Sequence 
GCTTCAGCTGGCAGTATACCTCGCCCTCTTCCTCGGCGCTGGGATGATGTCTCTGCTTGCCATATGGGCATGAGATCTTC
AGAGCAACCAAGAGCTGCAAATNTTTGAATATTGTCTCTGAAAAAGACACCCTGAGCTTAGTTTGTAGCTGACAGGGTTT
GATGTTGTCATAGCATTACTGCAANCAGCTTTTGTAGAATCTCCATCAACCAGAATTGGAGAAAAAGATGGNCTGAATAC
GACCGAAAGTTTAGAGTTTACTGACATGAGTACACAAGTCAAANGTTCAGGACAAATCTGATTCTTGGGCAAATGGTGTN
CTTCCACCAGTATAGCACNAANTGAAGTGAACAAGAATCAAATGGGTTAGTCGANGGTAGTGGTCCTTGANCNGATTTTC
TCTNCAAGTCNAANNNNTTNGTATAAAAATGATGACCTCCTTTTGGAGTCAATGTCAATGTACAGATTCTCAGCTAGGGT
AAATCCTTNTTGTATGACAAGAGCTCTGTGAAGTTTGTTCACTTGTTCAGTGAAGAATCAAATAATCCCCAGCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54471.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis