Browse Element(s) Details


Os.23567.2.S1_at

Description gb:AK108310.1
DB_XREF= gi:32993519
TID=Os.23567.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23567 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-141-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-F10, full insert sequence.
FL= gb:AK108310.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1064911/11GTP-binding protein ERG, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10612Os.57002.1.S1_at11/118+6245011..6245864expressed protein
LOC_Os08g10620OsAffx.16937.2.S1_at9/118+6249568..6251757hypothetical protein
LOC_Os08g10630Os.54471.1.S1_at11/118+6261481..6264553ZIP zinc/iron transport family protein, expressed
LOC_Os08g10630Os.47413.1.S1_x_at1/118+6261481..6264553ZIP zinc/iron transport family protein, expressed
LOC_Os08g10649Os.23567.2.S1_at11/118+6265872..6274575GTP-binding protein ERG, putative, expressed
LOC_Os08g10649Os.23567.1.S1_at11/118+6265872..6274575GTP-binding protein ERG, putative, expressed
LOC_Os08g10670Os.54821.1.S1_at11/118+6274879..6280325Eukaryotic aspartyl protease family protein, expressed
LOC_Os08g10680NANA8+6287738..6288025hypothetical protein
LOC_Os08g10690NANA8+6291160..6291399hypothetical protein
LOC_Os08g10700NANA8+6292639..6292896hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23567.2.S1_at--334--7671Chr08:6267772..6267796 (25 bp)
GGGATAACTCAAATAGTATGTTCTG
LOC_Os08g10649
Os.23567.2.S1_at--364--3091Chr08:6267783..6267807 (25 bp)
AATAGTATGTTCTGTTACCAATATC
LOC_Os08g10649
Os.23567.2.S1_at--81--6791Chr08:6267796..6267820 (25 bp)
GTTACCAATATCTGCTTGTGCTAGT
LOC_Os08g10649
Os.23567.2.S1_at--930--471Chr08:6267805..6267829 (25 bp)
ATCTGCTTGTGCTAGTATGAAGTGA
LOC_Os08g10649
Os.23567.2.S1_at--755--10311Chr08:6267838..6267862 (25 bp)
TTTCAATTTTTGATGGTACCGTTAT
LOC_Os08g10649
Os.23567.2.S1_at--910--6231Chr08:6267849..6267873 (25 bp)
GATGGTACCGTTATGGATTTCTAAA
LOC_Os08g10649
Os.23567.2.S1_at--1152--6491Chr08:6267864..6267888 (25 bp)
GATTTCTAAAAATCCTGTCTAACGA
LOC_Os08g10649
Os.23567.2.S1_at--596--9271Chr08:6267876..6267900 (25 bp)
TCCTGTCTAACGATGCTTGTCTGTA
LOC_Os08g10649
Os.23567.2.S1_at--9--9811Chr08:6267883..6267907 (25 bp)
TAACGATGCTTGTCTGTATTTCATT
LOC_Os08g10649
Os.23567.2.S1_at--158--3591Chr08:6267904..6267928 (25 bp)
CATTTGCAAATACTGAATTCTGGAC
LOC_Os08g10649
Os.23567.2.S1_at--607--3091Chr08:6267912..6267936 (25 bp)
AATACTGAATTCTGGACAATGATGA
LOC_Os08g10649
Target Sequence 
GGGATAACTCAAATAGTATGTTCTGTTACCAATATCTGCTTGTGCTAGTATGAAGTGAATTCATATTTTCAATTTTTGAT
GGTACCGTTATGGATTTCTAAAAATCCTGTCTAACGATGCTTGTCTGTATTTCATTTGCAAATACTGAATTCTGGACAAT
GATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23567.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis