Browse Element(s) Details


Os.57002.1.S1_at

Description gb:AK110728.1
DB_XREF= gi:32995937
TID=Os.57002.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57002 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-170-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-E07, full insert sequence.
FL= gb:AK110728.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1061211/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10580Os.53222.1.S1_at10/118+6219930..6224960Methyl-CpG binding domain containing protein, expressed
LOC_Os08g10580OsAffx.24875.1.S1_at1/118+6219930..6224960Methyl-CpG binding domain containing protein, expressed
LOC_Os08g10590OsAffx.29136.1.S1_x_at11/118+6225725..6227789expressed protein
LOC_Os08g10590Os.27409.1.A1_at10/118+6225725..6227789expressed protein
LOC_Os08g10600Os.8341.1.S1_at11/118+6231107..6235779UDP-N-acetylglucosamine pyrophosphorylase, putative, expressed
LOC_Os08g10604OsAffx.29137.1.S1_at11/118+6235817..6237381Pectinesterase family protein, expressed
LOC_Os08g10608Os.9287.1.S1_at11/118+6237621..624080540S ribosomal protein S11, putative, expressed
LOC_Os08g10612Os.57002.1.S1_at11/118+6245011..6245864expressed protein
LOC_Os08g10620OsAffx.16937.2.S1_at9/118+6249568..6251757hypothetical protein
LOC_Os08g10630Os.54471.1.S1_at11/118+6261481..6264553ZIP zinc/iron transport family protein, expressed
LOC_Os08g10630Os.47413.1.S1_x_at1/118+6261481..6264553ZIP zinc/iron transport family protein, expressed
LOC_Os08g10649Os.23567.2.S1_at11/118+6265872..6274575GTP-binding protein ERG, putative, expressed
LOC_Os08g10649Os.23567.1.S1_at11/118+6265872..6274575GTP-binding protein ERG, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57002.1.S1_at--792--351Chr08:6245540..6245564 (25 bp)
ATAAGTCAGCGGACGGACCGCTCGA
LOC_Os08g10612
Os.57002.1.S1_at--1048--5211Chr08:6245576..6245600 (25 bp)
GAATAAATTTGTTCCGCACTACCCG
LOC_Os08g10612
Os.57002.1.S1_at--863--1951Chr08:6245626..6245650 (25 bp)
ACTGTGGGCTCAGTTTCCTTCCATA
LOC_Os08g10612
Os.57002.1.S1_at--242--9251Chr08:6245641..6245665 (25 bp)
TCCTTCCATAGTACCTTCATTCAAT
LOC_Os08g10612
Os.57002.1.S1_at--14--8291Chr08:6245706..6245730 (25 bp)
TGTCTTTGGGACAATTTTTGGGCTA
LOC_Os08g10612
Os.57002.1.S1_at--476--10331Chr08:6245721..6245745 (25 bp)
TTTTGGGCTAGGATCCGGCAACCGG
LOC_Os08g10612
Os.57002.1.S1_at--750--3251Chr08:6245739..6245763 (25 bp)
CAACCGGTGCTTGCGCTCTGAGAGG
LOC_Os08g10612
Os.57002.1.S1_at--749--9251Chr08:6245776..6245800 (25 bp)
TCCTCTTGTGCAGCCGATCAATTCA
LOC_Os08g10612
Os.57002.1.S1_at--1081--6451Chr08:6245791..6245815 (25 bp)
GATCAATTCATCTCTAGCTGCTGGT
LOC_Os08g10612
Os.57002.1.S1_at--887--451Chr08:6245800..6245824 (25 bp)
ATCTCTAGCTGCTGGTGGCACTGCA
LOC_Os08g10612
Os.57002.1.S1_at--818--3751Chr08:6245832..6245856 (25 bp)
CTCATGCACCAGCTATAGTACTACA
LOC_Os08g10612
Target Sequence 
ATAAGTCAGCGGACGGACCGCTCGAGGGTAAGTGAGGAATAAATTTGTTCCGCACTACCCGTGTCCATGCGCTTGGGGTT
CCGCCCACTGTGGGCTCAGTTTCCTTCCATAGTACCTTCATTCAATTAAGCTACACAGAATAGGATTCTTGTACTGTGGG
GAGGAGTGTCTTTGGGACAATTTTTGGGCTAGGATCCGGCAACCGGTGCTTGCGCTCTGAGAGGCCTTAGCCGCCCTCCT
CTTGTGCAGCCGATCAATTCATCTCTAGCTGCTGGTGGCACTGCACCGCAGCCTCATGCACCAGCTATAGTACTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57002.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis