Browse Element(s) Details


OsAffx.29136.1.S1_x_at

Description tigr:9636.m01019
TID=OsAffx.29136.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=CG15040-PA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1059011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10550Os.17644.1.S1_at7/118+6200351..6204827Potassium transporter 11, putative, expressed
LOC_Os08g10550OsAffx.26001.3.S1_x_at1/118+6200351..6204827Potassium transporter 11, putative, expressed
LOC_Os08g10560OsAffx.16936.1.S1_at11/118+6205731..6211933Histone-like transcription factor and archaeal histone family protein
LOC_Os08g10560OsAffx.30713.1.S1_at5/118+6205731..6211933Histone-like transcription factor and archaeal histone family protein
LOC_Os08g10560OsAffx.30713.1.S1_x_at1/118+6205731..6211933Histone-like transcription factor and archaeal histone family protein
LOC_Os08g10570Os.15538.1.S1_at10/118+6212346..6217696bifunctional purine biosynthesis protein PurH containing protein, expressed
LOC_Os08g10580Os.53222.1.S1_at10/118+6219930..6224960Methyl-CpG binding domain containing protein, expressed
LOC_Os08g10580OsAffx.24875.1.S1_at1/118+6219930..6224960Methyl-CpG binding domain containing protein, expressed
LOC_Os08g10590OsAffx.29136.1.S1_x_at11/118+6225725..6227789expressed protein
LOC_Os08g10590Os.27409.1.A1_at10/118+6225725..6227789expressed protein
LOC_Os08g10600Os.8341.1.S1_at11/118+6231107..6235779UDP-N-acetylglucosamine pyrophosphorylase, putative, expressed
LOC_Os08g10604OsAffx.29137.1.S1_at11/118+6235817..6237381Pectinesterase family protein, expressed
LOC_Os08g10608Os.9287.1.S1_at11/118+6237621..624080540S ribosomal protein S11, putative, expressed
LOC_Os08g10612Os.57002.1.S1_at11/118+6245011..6245864expressed protein
LOC_Os08g10620OsAffx.16937.2.S1_at9/118+6249568..6251757hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29136.1.S1_x_at--314--1251Chr08:6226825..6226849 (25 bp)
AGTTGGTTTCTCTTTAACTCCTGAG
LOC_Os08g10590
OsAffx.29136.1.S1_x_at--873--1491Chr08:6226858..6226882 (25 bp)
AGCACCTGCCACAAGCTTTTGGAGA
LOC_Os08g10590
OsAffx.29136.1.S1_x_at--669--8031Chr08:6226897..6226921 (25 bp)
GGAGTTACCGGTTTCCATGCAAACA
LOC_Os08g10590
OsAffx.29136.1.S1_x_at--742--8151Chr08:6226925..6226949 (25 bp)
GGAAAACCTGTTGTGAGCTCTGCGT
LOC_Os08g10590
OsAffx.29136.1.S1_x_at--746--8471Chr08:6227040..6227064 (25 bp)
TGGCTGTGCCATCTCTATTTGGGAA
LOC_Os08g10590
OsAffx.29136.1.S1_x_at--1102--8211Chr08:6227061..6227085 (25 bp)
GGAATTCCTGGTCAGATCCATGCAT
LOC_Os08g10590
OsAffx.29136.1.S1_x_at--718--8871Chr08:6227086..6227110 (25 bp)
TGAGTTTGCCTTCAAGACCCTTAGA
LOC_Os08g10590
OsAffx.29136.1.S1_x_at--684--1331Chr08:6227108..6227132 (25 bp)
AGAGGTGACATTCCTGTTCTGGATG
LOC_Os08g10590
OsAffx.29136.1.S1_x_at--752--8971Chr08:6227146..6227170 (25 bp)
TGAACAATACTTCCCTCAACATGAC
LOC_Os08g10590
OsAffx.29136.1.S1_x_at--732--2371Chr08:6227177..6227201 (25 bp)
AAACCTCCATCACCAGATTATTCTG
LOC_Os08g10590
OsAffx.29136.1.S1_x_at--260--6551Chr08:6227192..6227216 (25 bp)
GATTATTCTGCTTCACCAAGTTGTT
LOC_Os08g10590
Target Sequence 
AGTTGGTTTCTCTTTAACTCCTGAGCCGGAAGAAGCACCTGCCACAAGCTTTTGGAGAAATGTTGCAAATCAGGAGTTAC
CGGTTTCCATGCAAACAGATGGAAAACCTGTTGTGAGCTCTGCGTTAAATGTTGAATACCAAAATGTGCCAGCCACAGCA
CCCGCTCAGCCAACGCGAGCTCCACATCCTGAAGCAGCCTCCTATCCGTCTGGGCTGGCTGTGCCATCTCTATTTGGGAA
TTCCTGGTCAGATCCATGCATTGAGTTTGCCTTCAAGACCCTTAGAGGTGACATTCCTGTTCTGGATGATACTTCAGCTG
TTGAACAATACTTCCCTCAACATGACTTGAATAAACCTCCATCACCAGATTATTCTGCTTCACCAAGTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29136.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis