Browse Element(s) Details


Os.53222.1.S1_at

Description gb:AK071442.1
DB_XREF= gi:32981465
TID=Os.53222.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53222 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023091M14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023091M14, full insert sequence.
FL= gb:AK071442.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1058010/11Methyl-CpG binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10550Os.17644.1.S1_at7/118+6200351..6204827Potassium transporter 11, putative, expressed
LOC_Os08g10550OsAffx.26001.3.S1_x_at1/118+6200351..6204827Potassium transporter 11, putative, expressed
LOC_Os08g10560OsAffx.16936.1.S1_at11/118+6205731..6211933Histone-like transcription factor and archaeal histone family protein
LOC_Os08g10560OsAffx.30713.1.S1_at5/118+6205731..6211933Histone-like transcription factor and archaeal histone family protein
LOC_Os08g10560OsAffx.30713.1.S1_x_at1/118+6205731..6211933Histone-like transcription factor and archaeal histone family protein
LOC_Os08g10570Os.15538.1.S1_at10/118+6212346..6217696bifunctional purine biosynthesis protein PurH containing protein, expressed
LOC_Os08g10580Os.53222.1.S1_at10/118+6219930..6224960Methyl-CpG binding domain containing protein, expressed
LOC_Os08g10580OsAffx.24875.1.S1_at1/118+6219930..6224960Methyl-CpG binding domain containing protein, expressed
LOC_Os08g10590OsAffx.29136.1.S1_x_at11/118+6225725..6227789expressed protein
LOC_Os08g10590Os.27409.1.A1_at10/118+6225725..6227789expressed protein
LOC_Os08g10600Os.8341.1.S1_at11/118+6231107..6235779UDP-N-acetylglucosamine pyrophosphorylase, putative, expressed
LOC_Os08g10604OsAffx.29137.1.S1_at11/118+6235817..6237381Pectinesterase family protein, expressed
LOC_Os08g10608Os.9287.1.S1_at11/118+6237621..624080540S ribosomal protein S11, putative, expressed
LOC_Os08g10612Os.57002.1.S1_at11/118+6245011..6245864expressed protein
LOC_Os08g10620OsAffx.16937.2.S1_at9/118+6249568..6251757hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53222.1.S1_at--545--5371NONE
GAAGACTGATCCGTACTACATTGAT
NONE
Os.53222.1.S1_at--908--451Chr08:6224648..6224672 (25 bp)
ATCTCATGTGAGTTCCTTGCAGTTC
LOC_Os08g10580
Os.53222.1.S1_at--835--9231Chr08:6224661..6224685 (25 bp)
TCCTTGCAGTTCTTCTTGGTTTGAG
LOC_Os08g10580
Os.53222.1.S1_at--179--8292Chr08:6224693..6224717 (25 bp)
GGCATTTTGCTTCTTCTATCAGGAC
LOC_Os08g10580
Os.53222.1.S1_at--274--10171Chr08:6224741..6224765 (25 bp)
TATCTTAATTACCATGCACACCTCA
LOC_Os08g10580
Os.53222.1.S1_at--321--6111Chr08:6224799..6224823 (25 bp)
GAGTCCAGCCCTAGTAATTATATGT
LOC_Os08g10580
Os.53222.1.S1_at--72--6971Chr08:6224829..6224853 (25 bp)
GTAGCTCAGACATCAGCCACATGTG
LOC_Os08g10580
Os.53222.1.S1_at--56--791Chr08:6224849..6224873 (25 bp)
ATGTGAAGTGTCAACTGCTCCTTGT
LOC_Os08g10580
Os.53222.1.S1_at--237--10711Chr08:6224879..6224903 (25 bp)
TTGCCCCTCTTTGCGTGCGTAAAGA
LOC_Os08g10580
Os.53222.1.S1_at--157--5251Chr08:6224902..6224926 (25 bp)
GAATCAGAGTTTTCATGCACTATTA
LOC_Os08g10580
Os.53222.1.S1_at--307--6471Chr08:6224932..6224956 (25 bp)
GATAAAGAACTCTGATTCCTTCTGA
LOC_Os08g10580
Target Sequence 
GAAGACTGATCCGTACTACATTGATCCAGTCAGTGGATATGAATTTCGCTCTCTGAAGGATGTGCACCGTTTTCTTAAAT
CAGGGGACATCTATAAATGCATTGTAAGGCCAAGAAAGAGAACTATCCAAGATCCTTGTACTATTGAAAACCAATCTCAT
GTGAGTTCCTTGCAGTTCTTCTTGGTTTGAGTTACTGGGGCATTTTGCTTCTTCTATCAGGACATTAAATAAACAAAAAT
ACTAGGTATCTTAATTACCATGCACACCTCAAATTGAACATATTTGCTTTGGTTAAAATTTATAGAGTCCAGCCCTAGTA
ATTATATGTTTCTTGTAGCTCAGACATCAGCCACATGTGAAGTGTCAACTGCTCCTTGTCCTGGTTGCCCCTCTTTGCGT
GCGTAAAGAATCAGAGTTTTCATGCACTATTACATCAGATAAAGAACTCTGATTCCTTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53222.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis