Browse Element(s) Details


OsAffx.16936.1.S1_at

Description tigr:9636.m01016
TID=OsAffx.16936.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to Transcription factor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1056011/11Histone-like transcription factor and archaeal histone family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10540OsAffx.29113.1.S1_at4/118+6183423..6187844retrotransposon protein, putative, unclassified
LOC_Os08g10550Os.17644.1.S1_at7/118+6200351..6204827Potassium transporter 11, putative, expressed
LOC_Os08g10550OsAffx.26001.3.S1_x_at1/118+6200351..6204827Potassium transporter 11, putative, expressed
LOC_Os08g10560OsAffx.16936.1.S1_at11/118+6205731..6211933Histone-like transcription factor and archaeal histone family protein
LOC_Os08g10560OsAffx.30713.1.S1_at5/118+6205731..6211933Histone-like transcription factor and archaeal histone family protein
LOC_Os08g10560OsAffx.30713.1.S1_x_at1/118+6205731..6211933Histone-like transcription factor and archaeal histone family protein
LOC_Os08g10570Os.15538.1.S1_at10/118+6212346..6217696bifunctional purine biosynthesis protein PurH containing protein, expressed
LOC_Os08g10580Os.53222.1.S1_at10/118+6219930..6224960Methyl-CpG binding domain containing protein, expressed
LOC_Os08g10580OsAffx.24875.1.S1_at1/118+6219930..6224960Methyl-CpG binding domain containing protein, expressed
LOC_Os08g10590OsAffx.29136.1.S1_x_at11/118+6225725..6227789expressed protein
LOC_Os08g10590Os.27409.1.A1_at10/118+6225725..6227789expressed protein
LOC_Os08g10600Os.8341.1.S1_at11/118+6231107..6235779UDP-N-acetylglucosamine pyrophosphorylase, putative, expressed
LOC_Os08g10604OsAffx.29137.1.S1_at11/118+6235817..6237381Pectinesterase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016602cellular_componentCCAAT-binding factor complex
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16936.1.S1_at--994--1111Chr08:6206304..6206328 (25 bp)
AGTGAACCCAATGCAGCTTCCAGAG
LOC_Os08g10560
OsAffx.16936.1.S1_at--560--3011Chr08:6206295..6206319 (25 bp)
AATGCAGCTTCCAGAGCATCAGCAG
LOC_Os08g10560
OsAffx.16936.1.S1_at--430--1371Chr08:6206283..6206307 (25 bp)
AGAGCATCAGCAGCACGCAATCCAG
LOC_Os08g10560
OsAffx.16936.1.S1_at--918--5091Chr08:6206271..6206295 (25 bp)
GCACGCAATCCAGCAAGTTCAGCAG
LOC_Os08g10560
OsAffx.16936.1.S1_at--243--4031Chr08:6206215..6206239 (25 bp)
CGTTCTGGGCCGACCAGATGGCCGA
LOC_Os08g10560
OsAffx.16936.1.S1_at--267--6231Chr08:6206199..6206223 (25 bp)
GATGGCCGAGGTTGAACAGATGACT
LOC_Os08g10560
OsAffx.16936.1.S1_at--373--3431Chr08:6206183..6206207 (25 bp)
CAGATGACTGAGTTCAAGCTCCCCA
LOC_Os08g10560
OsAffx.16936.1.S1_at--675--2631Chr08:6206159..6206183 (25 bp)
AACCTCCCGCTTGCAAGGATCAAGA
LOC_Os08g10560
OsAffx.16936.1.S1_at--1066--951Chr08:6206116..6206140 (25 bp)
AGGACGTCAAGATGATCGCGGGCGA
LOC_Os08g10560
OsAffx.16936.1.S1_at--865--8791Chr08:6206059..6206083 (25 bp)
TGTTCATCCTGGACATGACGCTGCG
LOC_Os08g10560
OsAffx.16936.1.S1_at--410--8531Chr08:6206050..6206074 (25 bp)
TGGACATGACGCTGCGGTCCTGGCA
LOC_Os08g10560
Target Sequence 
AGTGAACCCAATGCAGCTTCCAGAGCATCAGCAGCACGCAATCCAGCAAGTTCAGCAGCTCCAGCAGCAGCAGAAGGAGC
AGCTCCAGGCGTTCTGGGCCGACCAGATGGCCGAGGTTGAACAGATGACTGAGTTCAAGCTCCCCAACCTCCCGCTTGCA
AGGATCAAGAAGATCATGAAGGCCGATGAGGACGTCAAGATGATCGCGGGCGAGGCACCGGCGCTCTTCGCCAAGGCCTG
CGAGATGTTCATCCTGGACATGACGCTGCGGTCCTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16936.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis