Browse Element(s) Details


OsAffx.29113.1.S1_at

Description tigr:9636.m00868
TID=OsAffx.29113.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0913010/11hypothetical protein
LOC_Os08g105404/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09050OsAffx.16907.1.S1_at8/118+5250093..5252825hypothetical protein
LOC_Os08g09050OsAffx.26996.1.S1_x_at3/118+5250093..5252825hypothetical protein
LOC_Os08g09050OsAffx.26996.1.S1_at2/118+5250093..5252825hypothetical protein
LOC_Os08g09050OsAffx.10528.1.S1_at1/118+5250093..5252825hypothetical protein
LOC_Os08g09050OsAffx.29111.1.S1_at1/118+5250093..5252825hypothetical protein
LOC_Os08g09060Os.2321.1.S1_at10/118+5253811..5254949Germin-like protein subfamily 1 member 11 precursor, putative, expressed
LOC_Os08g09069NANA8+5256252..5256684NA
LOC_Os08g09080Os.2320.1.S1_at11/118+5257901..5259004Germin-like protein subfamily 1 member 11 precursor, putative, expressed
LOC_Os08g09090OsAffx.16908.1.S1_at10/118+5260531..5261145hypothetical protein
LOC_Os08g09100Os.11850.1.S1_at10/118+5261760..5266708RNA Binding Protein 45, putative, expressed
LOC_Os08g09110OsAffx.16909.1.S1_at11/118+5268520..5272950NB-ARC domain containing protein, expressed
LOC_Os08g09120OsAffx.29112.1.S1_at10/118+5273930..5274450hypothetical protein
LOC_Os08g09130OsAffx.29113.1.S1_at10/118+5277633..5279258hypothetical protein
LOC_Os08g09140Os.45173.5.S1_x_at4/118+5288740..5294220retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g09150NANA8+5298529..5301670retrotransposon protein, putative, unclassified
LOC_Os08g09160NANA8+5302298..5306215retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29113.1.S1_at--787--791NONE
ATGTGGAGAGTCTTCTCGTCTTCAA
NONE
OsAffx.29113.1.S1_at--306--7151Chr08:5278506..5278530 (25 bp)
GTCTTCTCGTCTTCAATTATGCTAG
LOC_Os08g09130
OsAffx.29113.1.S1_at--97--631Chr08:5278524..5278548 (25 bp)
ATGCTAGTTCTTTTAGAAGGGCTAT
LOC_Os08g09130
OsAffx.29113.1.S1_at--762--2311Chr08:5278649..5278673 (25 bp)
AAAGGTGTTCTCTCTGTTAACTCAA
LOC_Os08g09130
OsAffx.29113.1.S1_at--984--7032Chr08:5278675..5278699 (25 bp)
GTACAAGGCTATTATATATCGTGAC
LOC_Os08g09130
OsAffx.29113.1.S1_at--732--252Chr08:5278690..5278714 (25 bp)
ATATCGTGACATTGTGCCAAGGAAA
LOC_Os08g09130
OsAffx.29113.1.S1_at--697--6511Chr08:5278720..5278744 (25 bp)
GTTTCAGAAGTTAAGAGTACCGTTG
LOC_Os08g09130
OsAffx.29113.1.S1_at--751--6452Chr08:5278747..5278771 (25 bp)
GATCAAAATCTTTCTATGGTACCTA
LOC_Os08g09130
OsAffx.29113.1.S1_at--14--10331Chr08:5279118..5279142 (25 bp)
TTCTGGGCGCGGGAATGGTCCTTAC
LOC_Os08g09130
OsAffx.29113.1.S1_at--679--8171Chr08:5279129..5279153 (25 bp)
GGAATGGTCCTTACTTCTTAAAGAG
LOC_Os08g09130
OsAffx.29113.1.S1_at--811--6752Chr08:5279189..5279213 (25 bp)
GTTAGAAACGACAATGTTGGACTTC
LOC_Os08g09130
Target Sequence 
ATGTGGAGAGTCTTCTCGTCTTCAATTATGCTAGTTCTTTTAGAAGGGCTATTTTGGGGGATAACTTAAAAACTTGGTTG
GAGGAAGTGTATAAAAAAGGTGTTCTCTCTGTTAACTCAATGTACAAGGCTATTATATATCGTGACATTGTGCCAAGGAA
AGAGGTGTTTCAGAAGTTAAGAGTACCGTTGAAGATCAAAATCTTTCTATGGTACCTAAGAAAGGGGGTCATTCTAACCA
ATGATAATTTGGCTAAGAGAGGATGGGTTGGGAGGACTTTCTGGGCGCGGGAATGGTCCTTACTTCTTAAAGAGGAAGAG
GGCCAACATGTGAAAGATGGATGCAAAAAGTTAGAAACGACAATGTTGGACTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29113.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis