Browse Element(s) Details


Os.11850.1.S1_at

Description gb:AK072804.1
DB_XREF= gi:32982827
TID=Os.11850.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.11850 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023135B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023135B10, full insert sequence.
FL= gb:AK072804.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0910010/11RNA Binding Protein 45, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09010Os.2211.1.S1_at11/118+5236153..5237313Germin-like protein subfamily 1 member 11 precursor, putative, expressed
LOC_Os08g09020Os.23557.1.A1_at1/118+5242446..5243310Germin-like protein subfamily 1 member 11 precursor, putative
LOC_Os08g09030OsAffx.29111.1.S1_at11/118+5243646..5244227hypothetical protein
LOC_Os08g09040Os.23557.1.A1_at1/118+5247948..5248886Germin-like protein subfamily 1 member 11 precursor, putative, expressed
LOC_Os08g09050OsAffx.16907.1.S1_at8/118+5250093..5252825hypothetical protein
LOC_Os08g09050OsAffx.26996.1.S1_x_at3/118+5250093..5252825hypothetical protein
LOC_Os08g09050OsAffx.26996.1.S1_at2/118+5250093..5252825hypothetical protein
LOC_Os08g09050OsAffx.10528.1.S1_at1/118+5250093..5252825hypothetical protein
LOC_Os08g09050OsAffx.29111.1.S1_at1/118+5250093..5252825hypothetical protein
LOC_Os08g09060Os.2321.1.S1_at10/118+5253811..5254949Germin-like protein subfamily 1 member 11 precursor, putative, expressed
LOC_Os08g09069NANA8+5256252..5256684NA
LOC_Os08g09080Os.2320.1.S1_at11/118+5257901..5259004Germin-like protein subfamily 1 member 11 precursor, putative, expressed
LOC_Os08g09090OsAffx.16908.1.S1_at10/118+5260531..5261145hypothetical protein
LOC_Os08g09100Os.11850.1.S1_at10/118+5261760..5266708RNA Binding Protein 45, putative, expressed
LOC_Os08g09110OsAffx.16909.1.S1_at11/118+5268520..5272950NB-ARC domain containing protein, expressed
LOC_Os08g09120OsAffx.29112.1.S1_at10/118+5273930..5274450hypothetical protein
LOC_Os08g09130OsAffx.29113.1.S1_at10/118+5277633..5279258hypothetical protein
LOC_Os08g09140Os.45173.5.S1_x_at4/118+5288740..5294220retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11850.1.S1_at--827--8411Chr08:5262855..5262879 (25 bp)
GGCCGCAGCCCTTCAAATAGACAAG
LOC_Os08g09100
Os.11850.1.S1_at--383--10111Chr08:5262677..5262701 (25 bp)
TATGGGTATGCTCAACCTCAGGACC
LOC_Os08g09100
Os.11850.1.S1_at--713--751Chr08:5262647..5262671 (25 bp)
ATGTACGGGTATGGAGCTTATGCTG
LOC_Os08g09100
Os.11850.1.S1_at--1126--4111NONE
CGCAGCAGCAACAGTGAGATCCAAT
NONE
Os.11850.1.S1_at--811--7851Chr08:5261962..5261986 (25 bp)
GGTTTTCGAGACTGATCAAAGCCGT
LOC_Os08g09100
Os.11850.1.S1_at--836--5451Chr08:5261936..5261960 (25 bp)
GAACGAGGTGATGCTTCTGCATTCC
LOC_Os08g09100
Os.11850.1.S1_at--222--9071Chr08:5261919..5261943 (25 bp)
TGCATTCCGGAGCATGTCTGGGTTA
LOC_Os08g09100
Os.11850.1.S1_at--270--6931Chr08:5261873..5261897 (25 bp)
GTAGTTCTCCAGATTTTGACTGCTT
LOC_Os08g09100
Os.11850.1.S1_at--718--2111Chr08:5261827..5261851 (25 bp)
ACATGTTCTGTACTTCTGTGAGCCT
LOC_Os08g09100
Os.11850.1.S1_at--739--7771Chr08:5261797..5261821 (25 bp)
GGTGCACATTGTGATTCTGTCGTAC
LOC_Os08g09100
Os.11850.1.S1_at--632--6571Chr08:5261785..5261809 (25 bp)
GATTCTGTCGTACATGTGAACTGCA
LOC_Os08g09100
Target Sequence 
GGCCGCAGCCCTTCAAATAGACAAGCTCAGCCTCAACAGGATTCCAACCAGTGGGGTGGTGCTAATGCTGGATACTACGG
TTNATGGGNCAAGGATATGAGGGTTATGGGTATGCTCAACCTCAGGACCCTAATATGTACGGGTATGGAGCTTATGCTGG
TTATCCCAACTACCAACAACCCCTAGCTCAGCAGCCGCAGCAGCAACAGTGAGATCCAATGGAAGATTTGGTTTTCGAGA
CTGATCAAAGCCGTCGAACGAGGTGATGCTTCTGCATTCCGGAGCATGTCTGGGTTATGTCAATAGAGATTGTGATTTGT
AGTTCTCCAGATTTTGACTGCTTATGAGGTGTTTTGATTAAGCGACATGTTCTGTACTTCTGTGAGCCTGGGCTGGTGCA
CATTGTGATTCTGTCGTACATGTGAACTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11850.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis