Browse Element(s) Details


Os.23557.1.A1_at

Description gb:CA760001
DB_XREF= gi:25804040
DB_XREF=BR060010B20B06.ab1
CLONE=BR060010B20B06.ab1
TID=Os.23557.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.23557 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_187246.1 (A.thaliana) germin-like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g090201/11Germin-like protein subfamily 1 member 11 precursor, putative
LOC_Os08g090401/11Germin-like protein subfamily 1 member 11 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08980Os.2209.1.S1_at11/118+5222478..5223690Germin-like protein subfamily 1 member 7 precursor, putative, expressed
LOC_Os08g08980Os.2321.1.S1_at1/118+5222478..5223690Germin-like protein subfamily 1 member 7 precursor, putative, expressed
LOC_Os08g08990NANA8+5227520..5228375Germin-like protein subfamily 1 member 11 precursor, putative, expressed
LOC_Os08g09000NANA8+5232728..5233582Germin-like protein subfamily 1 member 7 precursor, putative
LOC_Os08g09010Os.2211.1.S1_at11/118+5236153..5237313Germin-like protein subfamily 1 member 11 precursor, putative, expressed
LOC_Os08g09020Os.23557.1.A1_at1/118+5242446..5243310Germin-like protein subfamily 1 member 11 precursor, putative
LOC_Os08g09030OsAffx.29111.1.S1_at11/118+5243646..5244227hypothetical protein
LOC_Os08g09040Os.23557.1.A1_at1/118+5247948..5248886Germin-like protein subfamily 1 member 11 precursor, putative, expressed
LOC_Os08g09050OsAffx.16907.1.S1_at8/118+5250093..5252825hypothetical protein
LOC_Os08g09050OsAffx.26996.1.S1_x_at3/118+5250093..5252825hypothetical protein
LOC_Os08g09050OsAffx.26996.1.S1_at2/118+5250093..5252825hypothetical protein
LOC_Os08g09050OsAffx.10528.1.S1_at1/118+5250093..5252825hypothetical protein
LOC_Os08g09050OsAffx.29111.1.S1_at1/118+5250093..5252825hypothetical protein
LOC_Os08g09060Os.2321.1.S1_at10/118+5253811..5254949Germin-like protein subfamily 1 member 11 precursor, putative, expressed
LOC_Os08g09069NANA8+5256252..5256684NA
LOC_Os08g09080Os.2320.1.S1_at11/118+5257901..5259004Germin-like protein subfamily 1 member 11 precursor, putative, expressed
LOC_Os08g09090OsAffx.16908.1.S1_at10/118+5260531..5261145hypothetical protein
LOC_Os08g09100Os.11850.1.S1_at10/118+5261760..5266708RNA Binding Protein 45, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000325cellular_componentvacuole (sensu Magnoliophyta)
GO:0005576cellular_componentextracellular region
GO:0005886cellular_componentplasma membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23557.1.A1_at--220--5031NONE
GCAGTTTTTGGATCGAAGCCCCCAA
NONE
Os.23557.1.A1_at--439--5411NONE
GAAGCCCCCAATTTCAGATGAAGTT
NONE
Os.23557.1.A1_at--441--5331Chr08:5243228..5243251 (24 bp)
GAAGTTTTGGCAAAGGCGTTCCAAG
LOC_Os08g09020
Os.23557.1.A1_at--292--5531Chr08:5248831..5248855 (25 bp)
GAAAGGGAACCATAGATTGGCTCCA
LOC_Os08g09040
Os.23557.1.A1_at--886--5631NONE
GAGAACAACCCCTACTAATTATCCT
NONE
Os.23557.1.A1_at--25--11Chr08:5248895..5248919 (25 bp)
AAAAATTATCGGCTTACGGACTATG
NONE
Os.23557.1.A1_at--953--471NONE
ATCGGCTTACGGACTATGTTTTAAT
NONE
Os.23557.1.A1_at--901--8031Chr08:5248954..5248978 (25 bp)
GGAGTTTGTACTTGTTATGCATACT
NONE
Os.23557.1.A1_at--962--7011Chr08:5248961..5248985 (25 bp)
GTACTTGTTATGCATACTTGCAAGC
NONE
Os.23557.1.A1_at--902--4951Chr08:5248972..5248996 (25 bp)
GCATACTTGCAAGCTGTGAGTTTTT
NONE
Os.23557.1.A1_at--1040--3171Chr08:5249016..5249040 (25 bp)
CAATATACATGTATGGTTTTCCCAT
NONE
Target Sequence 
GCAGTTTTTGGATCGAAGCCCCCAATTTCAGATGAAGTTTTGGCAAAGGCGTTCCAAGTTGGAAAGGGAACCATAGATTG
GCTCCAGGCTCAGTTATGGGAGAACAACCCCTACTAATTATCCTAAAAAATTATCGGCTTACGGACTATGTTTTAATTTT
ATATACAACATAAATAAGTGGTATGGAGTTTGTACTTGTTATGCATACTTGCAAGCTGTGAGTTTTTTTTTTTCTAATGT
ACTAATACCAATATACATGTATGGTTTTCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23557.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis